copa

Functions to perform cancer outlier profile analysis.

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Author James W. MacDonald
Maintainer James W. MacDonald

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("copa")

Vignettes (Documentation)

Package Downloads

copa.pdf
Source copa_1.4.0.tar.gz
Windows binary copa_1.4.0.zip
OS X binary copa_1.4.0.tgz

Details

biocViews
Depends Biobase, methods
Suggests colonCA
Imports
SystemRequirements
License Artistic
URL
dependsOnMe
suggestsMe