LPE
Methods for analyzing microarray data using Local Pooled Error
(LPE) method
This LPE library is used to do significance analysis of
microarray data with small number of replicates. It uses
resampling based FDR adjustment, and gives less conservative
results than traditional 'BH' or 'BY' procedures. Data accepted
is raw data in txt format from MAS4, MAS5 or dChip. Data can
also be supplied after normalization. LPE library is primarily
used for analyzing data between two conditions. To use it for
paired data, see LPEP library. For using LPE in multiple
conditions, use HEM library.
| Author |
Nitin Jain , Michael O'Connell
, Jae K. Lee .
Includes R source code contributed by HyungJun Cho
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| Maintainer |
Nitin Jain |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("LPE")
Vignettes (Documentation)
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Package Downloads
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Details
| biocViews |
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| License |
LGPL |
| URL |
http://www.r-project.org,
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| dependsOnMe |
arrayQCplot |
| suggestsMe |
ABarray |