Bioconductor Task View: Annotation

Subview of

Subviews

Packages in view

Package Maintainer Title
altcdfenvs Laurent Gautier alternative cdfenvs
annaffy Colin A. Smith Annotation tools for Affymetrix biological metadata
AnnBuilder J. Zhang Bioconductor annotation data package builder
annotate Biocore Team Annotation for microarrays
annotationTools Alexandre Kuhn Annotate microarrays and find orthologs using flat file databases
biomaRt Steffen Durinck Interface to BioMart databases (e.g. Ensembl, Wormbase, Gramene and Uniprot)
Category S. Falcon Category Analysis
ChromoViz Jihoon Kim Multimodal visualization of gene expression data
ecolitk Laurent Meta-data and tools for E. coli
exonmap Michal Okoniewski High level analysis of Affymetrix exon array data
gaggle Paul Shannon Broadcast data between R and Java bioinformatics programs
GeneR Y. d'Aubenton-Carafa R for genes and sequences analysis
GOstats S. Falcon Tools for manipulating GO and microarrays.
KEGGSOAP J. Zhang Client-side SOAP access KEGG
matchprobes Biocore Team Tools for sequence matching of probes on arrays
pdInfoBuilder Seth Falcon Platform Design Information Package Builder
Resourcerer Jianhua Zhang Reads annotation data from TIGR Resourcerer or convert the annotation data into Bioconductor data pacakge.
RMAPPER VJ Carey interface to mapper.chip.org
RSNPper VJ Carey interface to chip.org::SNPper for SNP-related data
simpleaffy Crispin Miller Very simple high level analysis of Affymetrix data