| Package | Maintainer | Title |
|---|---|---|
| altcdfenvs | Laurent Gautier | alternative cdfenvs |
| annaffy | Colin A. Smith | Annotation tools for Affymetrix biological metadata |
| AnnBuilder | J. Zhang | Bioconductor annotation data package builder |
| annotate | Biocore Team | Annotation for microarrays |
| annotationTools | Alexandre Kuhn | Annotate microarrays and find orthologs using flat file databases |
| biomaRt | Steffen Durinck | Interface to BioMart databases (e.g. Ensembl, Wormbase, Gramene and Uniprot) |
| Category | S. Falcon | Category Analysis |
| ChromoViz | Jihoon Kim | Multimodal visualization of gene expression data |
| ecolitk | Laurent | Meta-data and tools for E. coli |
| exonmap | Michal Okoniewski | High level analysis of Affymetrix exon array data |
| gaggle | Paul Shannon | Broadcast data between R and Java bioinformatics programs |
| GeneR | Y. d'Aubenton-Carafa | R for genes and sequences analysis |
| GOstats | S. Falcon | Tools for manipulating GO and microarrays. |
| KEGGSOAP | J. Zhang | Client-side SOAP access KEGG |
| matchprobes | Biocore Team | Tools for sequence matching of probes on arrays |
| pdInfoBuilder | Seth Falcon | Platform Design Information Package Builder |
| Resourcerer | Jianhua Zhang | Reads annotation data from TIGR Resourcerer or convert the annotation data into Bioconductor data pacakge. |
| RMAPPER | VJ Carey | interface to mapper.chip.org |
| RSNPper | VJ Carey | interface to chip.org::SNPper for SNP-related data |
| simpleaffy | Crispin Miller | Very simple high level analysis of Affymetrix data |