affy

Methods for Affymetrix Oligonucleotide Arrays

The package contains functions for exploratory oligonucleotide array analysis. The dependance to tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.

Author Rafael A. Irizarry , Laurent Gautier , Benjamin Milo Bolstad , and Crispin Miller with contributions from Magnus Astrand , Leslie M. Cope , Robert Gentleman, Jeff Gentry, Conrad Halling , Wolfgang Huber, James MacDonald , Benjamin I. P. Rubinstein, Christopher Workman , John Zhang
Maintainer Rafael A. Irizarry

Vignettes (Documentation)

Package Downloads

affy.pdf
builtinMethods.pdf
customMethods.pdf
dealing_with_cdfenvs.pdf
vim.pdf
Source affy_1.12.2.tar.gz
Windows binary affy_1.12.2.zip
OS X binary affy_1.12.2.tgz

Details

biocViews
Depends R, Biobase, methods, utils, affyio
Suggests tkWidgets, affydata, geneplotter
Imports
SystemRequirements
License LGPL version 2 or newer
URL
dependsOnMe adSplit, affycoretools, affydata, affylmGUI, affypdnn, affyPLM, affyQCReport, altcdfenvs, applera, beadarray, BeadExplorer, ecolitk, factDesign, gcrma, GeneTraffic, Harshlight, maDB, makecdfenv, matchprobes, mmgmos, panp, plier, simpleaffy, sscore, tilingArray, webbioc
suggestsMe limma, made4, siggenes, vsn