| Package | Maintainer | Title |
|---|---|---|
| aCGH | Jane Fridlyand | Classes and functions for Array Comparative Genomic Hybridization data. |
| apComplex | Denise Scholtens | Estimate protein complex membership using AP-MS protein data |
| bim | Brian S. Yandell | Bayesian Interval Mapping Diagnostics |
| Biostrings | H. Pages | String objects representing biological sequences, and matching algorithms |
| BSgenome | H. Pages | Infrastructure for Biostrings-based genome data packages |
| cellHTS | Ligia Bras | Analysis of cell-based screens |
| GeneR | Y. d'Aubenton-Carafa | R for genes and sequences analysis |
| GEOquery | Sean Davis | Get data from NCBI Gene Expression Omnibus (GEO) |
| pairseqsim | Witold Wolski | pairwise sequence alignment similarity simple. |
| ppiStats | Tony Chiang | Protein-Protein Interaction Statistical Package |
| prada | Florian Hahne | Data analysis for cell-based functional assays |
| PROcess | Xiaochun Li | Ciphergen SELDI-TOF Processing |
| rflowcyt | N. Le Meur | Statistical tools and data structures for analytic flow cytometry |
| RMAPPER | VJ Carey | interface to mapper.chip.org |
| RSNPper | VJ Carey | interface to chip.org::SNPper for SNP-related data |
| Ruuid | Biocore Team | Ruuid: Provides Universally Unique ID values |
| SAGElyzer | Jianhua Zhang | A package that deals with SAGE libraries |
| sagenhaft | Tim Beissbarth | Collection of functions for reading and comparing SAGE libraries |
| ScISI | Tony Chiang | In Silico Interactome |
| simulatorAPMS | Tony Chiang | Computationally simulates the AP-MS technology. |
| xcms | Colin A. Smith | LC/MS and GC/MS Data Analysis |