Package |
Maintainer |
Title |
ABarray
|
Yongming Andrew Sun |
Microarray QA and statistical data analysis for Applied
Biosystems Genome Survey Micorarray (AB1700) gene expression
data. |
affy
|
Rafael A. Irizarry |
Methods for Affymetrix Oligonucleotide Arrays |
affycomp
|
Rafael A. Irizarry |
Graphics Toolbox for Assessment of Affymetrix Expression
Measures |
affycoretools
|
James W. MacDonald |
Functions useful for those doing repetitive analyses with
Affymetrix GeneChips. |
affylmGUI
|
Keith Satterley |
GUI for affy analysis using limma package |
affypdnn
|
Laurent |
Probe Dependent Nearest Neighbours (PDNN) for the affy package |
affyPLM
|
Ben Bolstad |
Methods for fitting probe-level models |
altcdfenvs
|
Laurent Gautier |
alternative cdfenvs |
applera
|
Francesca Cordero |
applera |
aroma.light
|
Henrik Bengtsson |
Light-weight methods for normalization and visualization of
microarray data using only basic R data types |
arrayMagic
|
Andreas Buness |
two-colour cDNA array quality control and preprocessing |
beadarray
|
Mark Dunning |
Quality control and low-level analysis of BeadArrays |
beadarraySNP
|
Jan Oosting |
Normalization and reporting of Illumina SNP bead arrays |
BeadExplorer
|
Gareth Elvidge |
QC, normalisation, annotation and exploration of Illumina
BeadChip data |
cellHTS
|
Ligia Bras |
Analysis of cell-based screens |
codelink
|
Diego Diez |
Manipulation of Codelink Bioarrays data. |
gcrma
|
Z. Wu |
Background Adjustment Using Sequence Information |
genArise
|
IFC Development Team |
Microarray Analysis tool |
Harshlight
|
Maurizio Pellegrino |
A "corrective make-up" program for microarray chips |
limma
|
Gordon Smyth |
Linear Models for Microarray Data |
limmaGUI
|
Keith Satterley |
GUI for limma package |
LMGene
|
Geun Cheol Lee |
LMGene Software for Date Transformation and Identification of
Differentially Expressed Genes in Gene Expression Arrays |
maCorrPlot
|
Alexander Ploner |
Visualize artificial correlation in microarray data |
makecdfenv
|
James W. MacDonald |
CDF Environment Maker |
MANOR
|
Pierre Neuvial |
CGH Micro-Array NORmalization |
marray
|
Yee Hwa (Jean) Yang |
Exploratory analysis for two-color spotted microarray data |
mmgmos
|
Xuejun Liu |
multi-chip modified gamma Model of Oligonucleotide Signal |
nnNorm
|
Tarca Laurentiu |
Spatial and intensity based normalization of cDNA microarray
data based on robust neural nets |
OLIN
|
Matthias Futschik |
Optimized local intensity-dependent normalisation of two-color
microarrays |
OLINgui
|
Matthias Futschik |
Graphical user interface for OLIN |
rama
|
Raphael Gottardo |
Robust Analysis of MicroArrays |
SAGx
|
Per Broberg |
Statistical Analysis of the GeneChip |
simpleaffy
|
Crispin Miller |
Very simple high level analysis of Affymetrix data |
snapCGH
|
Mike Smith |
Segmentation, normalisation and processing of aCGH data. |
spotSegmentation
|
Chris Fraley |
Microarray Spot Segmentation and Gridding for Blocks of
Microarray Spots |
stepNorm
|
Yuanyuan Xiao |
Stepwise normalization functions for cDNA microarrays |
tilingArray
|
W. Huber |
Analysis of high-density oligonucleotide tiling arrays |
vsn
|
Wolfgang Huber |
Variance stabilization and calibration for microarray data |