Perform joint segmentation on two signal dimensions derived from total read depth (intensity) and allele specific read depth (intensity) for whole genome sequencing (WGS), whole exome sequencing (WES) and SNP array data.
| Version: | 0.3.4 |
| Depends: | R (≥ 2.10), RANN, DNAcopy |
| Published: | 2016-05-18 |
| DOI: | 10.32614/CRAN.package.saasCNV |
| Author: | Zhongyang Zhang [aut, cre], Ke Hao [aut], Nancy R. Zhang [ctb] |
| Maintainer: | Zhongyang Zhang <zhongyang.zhang at mssm.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://zhangz05.u.hpc.mssm.edu/saasCNV/ |
| NeedsCompilation: | no |
| Materials: | ChangeLog |
| CRAN checks: | saasCNV results |
| Reference manual: | saasCNV.pdf |
| Package source: | saasCNV_0.3.4.tar.gz |
| Windows binaries: | r-devel: saasCNV_0.3.4.zip, r-release: saasCNV_0.3.4.zip, r-oldrel: saasCNV_0.3.4.zip |
| macOS binaries: | r-release (arm64): saasCNV_0.3.4.tgz, r-oldrel (arm64): saasCNV_0.3.4.tgz, r-release (x86_64): saasCNV_0.3.4.tgz, r-oldrel (x86_64): saasCNV_0.3.4.tgz |
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