nLTT: Calculate the NLTT Statistic

Provides functions to calculate the normalised Lineage-Through- Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.

Version:	1.4.9
Imports:	ape, coda, testit
Suggests:	TreeSim, DDD, ggplot2, Hmisc, knitr, lintr, microbenchmark, plyr, reshape2, rmarkdown, TESS, testthat, DAISIE
Published:	2023-08-21
DOI:	10.32614/CRAN.package.nLTT
Author:	Thijs Janzen [aut, cre], Richèl J.C. Bilderbeek [aut], Pedro Neves [ctb]
Maintainer:	Thijs Janzen <thijsjanzen at gmail.com>
BugReports:	https://github.com/thijsjanzen/nLTT/issues
License:	GPL-2
URL:	https://github.com/thijsjanzen/nLTT
NeedsCompilation:	no
In views:	Phylogenetics
CRAN checks:	nLTT results

Documentation:

Reference manual:	nLTT.pdf
Vignettes:	How to visualize nLTT values distributions nltt_diff functions How to plot multiple nLTTs and their average How to stretch an nLTT timepoints matrix Trees with a root edge Walkthrough

Downloads:

Package source:	nLTT_1.4.9.tar.gz
Windows binaries:	r-devel: nLTT_1.4.9.zip, r-release: nLTT_1.4.9.zip, r-oldrel: nLTT_1.4.9.zip
macOS binaries:	r-release (arm64): nLTT_1.4.9.tgz, r-oldrel (arm64): nLTT_1.4.9.tgz, r-release (x86_64): nLTT_1.4.9.tgz, r-oldrel (x86_64): nLTT_1.4.9.tgz
Old sources:	nLTT archive

Reverse dependencies:

Reverse suggests:

babette, mcbette, nodeSub, treestats

Linking:

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