The Cauchy Process can model pulsed continuous trait evolution
on phylogenies. The likelihood is tractable, and is used for parameter
inference and ancestral trait reconstruction.
See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.
| Version: |
1.0.3 |
| Depends: |
R (≥ 3.5), ape (≥ 5.5) |
| Imports: |
methods, robustbase, phylolm (≥ 2.6.5), nloptr, pracma, foreach, doParallel, HDInterval |
| Suggests: |
covr, knitr, rmarkdown, spelling, geiger, testthat (≥ 3.0.0) |
| Published: |
2024-10-01 |
| DOI: |
10.32614/CRAN.package.cauphy |
| Author: |
Gilles Didier [aut, cph],
Paul Bastide [aut, cre] |
| Maintainer: |
Paul Bastide <paul.bastide at cnrs.fr> |
| BugReports: |
https://github.com/gilles-didier/cauphy/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://gilles-didier.github.io/cauphy/ |
| NeedsCompilation: |
yes |
| Language: |
en-US |
| Citation: |
cauphy citation info |
| Materials: |
README NEWS |
| CRAN checks: |
cauphy results |