This is a semi-major release, largely of the documentation of the package.
pkgdown
site, https://friendly.github.io/candisc/diabetes
vignette giving more discursive exampleso dontrun/donttest more examples from heplot.candisc to appease the CRAN daemon.
o Clarify docs for plot.candisc wrt col & pch (thx: Mohammad Bahram) o candisc gets a hex sticker on GitHub o Fix notes from devtools::check_win_devel
o Fixed bug in plot.candisc with default col and pch values (thx: David Carlson)
o Fix 1D plot.candisc to better reflect the canonical structure coefficients. The ylim of the scale is now forced to include 0 and -1 and/or +1 depending on the signs of the structure coefficients. [thx: Martina Vandebroek] o Pass … to boxplot() and plot() for 1D in plot.candisc o Added diabetes vignette
o Add Wilks.candisc method; this corrects a bug where the values of the stepdown tests for canonical discriminant analysis were calculated incorrectly [thx: Martina Vandebroek] o Now use Wilks.candisc in print.candisc
o respect var.lwd in 2D plot.candisc() o heplot.candisc() gets a rev.axes argument to reverse the axes and a var.pos argument to position variable labels o vectors() now produces nicer arrow head a la matlib::vectors() o added var.pos argument to plot.candisc o allow to suppress likelihood ratio tests in print.candisc
o Added Wine data – three cultivars with a very simple canonical structure o Added ellipses to plot.candisc(); enhanced candisc.Rd documentation o Added varOrder() for effect ordering in MLMs o plot.candisc() gets a var.labels argument o added method=“colmean” and descending=T/F to varOrder() o plot.candisc() gets a rev.axes argument o fixed imports() in NAMESPACE for CRAN checks
o Now use rgl:: in *3d functions and requireNamespace(“rgl”) o import(car)
o Added vecscale() to more reliably scale the variable vectors in plot.candisc() and heplot.candisc()
to the plot bounding box [thx: Uwe Ligges for the code]
o Exported vecscale
o Added can_lm() to calculate the canonical lm() representation of a term in an mlm
o candisc() now doesn't allow ndim > rank [thx: yu-chuan.chen@stonybrook.edu]
o In plot.candisc() fixed bug in use of pch and col [thx: dcarlson@tamu.edu] and cleaned up code
o Don't use paste0() to avoid dependency on R>2.15.0
o Minor documentation changes
o In cancor(), now handle missing data more flexibly via na.rm= and use=
o Now suggest corrplot package for cancor.Rd example
o Reorganized print() and summary() methods for cancor()
o Smoothed out documentation
o Added observation weights to cancor() methods
o Added ability to plot X and or Y vectors in heplot.cancor()
o Extended example of plot.cancor(), showing variable vectors for X & Y
o Continued development of methods and plots for canonical correlation analysis within the
HE plot framework:
o Now export scores() and scores.cancor() method
o coef.cancor gets a standardize= argument
o Added redundancy() for redundancy analysis
o Added a plot.cancor() method, visualizing the relations between the Ycan and Xcan variable scores
o Added vectors3d()
o Added heplot3d() method for cancor objects.
o More significantly, re-implemented cancor() as an S3 generic, with a cancor.formula method and
the original as the cancor.default method.
o Added cancor and related methods for canonical correlation analysis
o Added Wilks() methods for Wilks' Lambda canonical tests
o Added vectors() for drawing labeled vectors
o Added S3 heplot.cancor() method for cancor objects.
o Fixed buglet in summary.candisc() [thx: David Carlson, dcarlson@tamu.edu]
o heplot.candisc now uses plot.candisc in the 1 df case
o Extended Description:
o Fixed Authors@R in DESCRIPTION for R 2.14.x
o Updated links to datavis.ca
o Updated candisc heplot3d() examples
o switched inst/CHANGES to NEWS
o Extended candiscList and Grass examples
o Extended package description
o Fixed minor buglet in print.candisc
o Fixed predictor.names problem with car_2.0-0
o Added var.cex to heplot.candisc and heplot3d.candisc
o Allow to select canonical dimension in plot(candisc(), which=)
o Added titles.1d argument to plot.candisc to allow customized titles for 1D plots
(wish of Manuel Sp?nola)
o Added Wolves data, with examples for 2-way design.
o Improved plot for 1D case.
o Michael Friendly now maintainer
o now require heplots >= 0.8-3 for use of xlim, ylim, zlim
o added asp="iso" to heplot3d.candisc, so default is now equal scaling
o improved documentation
o added var.lwd to heplot3d.candisc
o changed rgl.* to *3d functions to avoid rgl problems
o added suffix= to heplot.candisc and heplot3d.candisc
o added graphics=TRUE to menus in *.candiscList functions
o added suffix= to plot.candisc
o Initial version released to CRAN.