Last updated on 2024-11-03 11:49:49 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.8-5 | 10.84 | 192.02 | 202.86 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.8-5 | 0.46 | 2.02 | 2.48 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.8-5 | 336.58 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.8-5 | 354.77 | NOTE | |||
| r-devel-windows-x86_64 | 0.8-5 | 15.00 | 203.00 | 218.00 | NOTE | |
| r-patched-linux-x86_64 | 0.8-5 | 18.63 | 182.29 | 200.92 | NOTE | |
| r-release-linux-x86_64 | 0.8-5 | 10.14 | 145.52 | 155.66 | ERROR | |
| r-release-macos-arm64 | 0.8-5 | 106.00 | NOTE | |||
| r-release-macos-x86_64 | 0.8-5 | 146.00 | NOTE | |||
| r-release-windows-x86_64 | 0.8-5 | 15.00 | 219.00 | 234.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.8-5 | 91.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.8-5 | 178.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.8-5 | 17.00 | 262.00 | 279.00 | OK |
Version: 0.8-5
Check: Rd files
Result: NOTE
checkRd: (-1) datasets.Rd:15: Lost braces
15 | and dimension information (\code{dim} or code{length}) of each item,
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.8-5
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
mcaplot.Rd: multilines
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64
Version: 0.8-5
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.8-5
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'effects', 'plyr', 'car', 'AER'
Flavor: r-release-linux-x86_64
Version: 0.8-5
Check: examples
Result: ERROR
Running examples in ‘vcdExtra-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Accident
> ### Title: Traffic Accident Victims in France in 1958
> ### Aliases: Accident
> ### Keywords: datasets
>
> ### ** Examples
>
> # examples
> data(Accident)
> head(Accident)
age result mode gender Freq
1 50+ Died Pedestrian Male 704
2 50+ Died Pedestrian Female 378
3 50+ Died Bicycle Male 396
4 50+ Died Bicycle Female 56
5 50+ Died Motorcycle Male 742
6 50+ Died Motorcycle Female 78
>
> # for graphs, reorder mode
> Accident$mode <- ordered(Accident$mode,
+ levels=levels(Accident$mode)[c(4,2,3,1)])
>
> # Bertin's table
> accident_tab <- xtabs(Freq ~ gender + mode + age + result, data=Accident)
> structable(mode + gender ~ age + result, data=accident_tab)
mode Pedestrian Bicycle Motorcycle 4-Wheeled
gender Female Male Female Male Female Male Female Male
age result
0-9 Died 89 150 5 26 6 6 65 70
Injured 1967 3341 126 378 131 181 1362 1593
10-19 Died 28 70 31 76 54 362 61 150
Injured 1495 1827 7218 3407 3587 12311 2593 3543
20-29 Died 24 78 10 55 82 660 107 353
Injured 864 1521 609 1565 4010 18558 4361 9084
30-49 Died 49 223 24 146 98 889 199 720
Injured 1814 3178 1118 3024 3664 18909 7712 15086
50+ Died 378 704 56 396 78 742 253 513
Injured 5449 5206 1030 3863 1387 8597 5552 7423
>
> ## Loglinear models
> ## ----------------
>
> # mutual independence
> acc.mod0 <- glm(Freq ~ age + result + mode + gender,
+ data=Accident,
+ family=poisson)
> LRstats(acc.mod0)
Likelihood summary table:
AIC BIC LR Chisq Df Pr(>Chisq)
acc.mod0 60983 61007 60320 70 < 2.2e-16 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
>
> mosaic(acc.mod0, ~mode + age + gender + result)
>
> # result as a response
> acc.mod1 <- glm(Freq ~ age*mode*gender + result,
+ data=Accident,
+ family=poisson)
> LRstats(acc.mod1)
Likelihood summary table:
AIC BIC LR Chisq Df Pr(>Chisq)
acc.mod1 2942.4 3040.1 2217.7 39 < 2.2e-16 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
>
> mosaic(acc.mod1, ~mode + age + gender + result,
+ labeling_args = list(abbreviate = c(gender=1, result=4)))
>
> # allow two-way association of result with each explanatory variable
> acc.mod2 <- glm(Freq ~ age*mode*gender + result*(age+mode+gender),
+ data=Accident,
+ family=poisson)
> LRstats(acc.mod2)
Likelihood summary table:
AIC BIC LR Chisq Df Pr(>Chisq)
acc.mod2 968.13 1084.8 227.47 31 < 2.2e-16 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
> mosaic(acc.mod2, ~mode + age + gender + result,
+ labeling_args = list(abbreviate = c(gender=1, result=4)))
>
> acc.mods <- glmlist(acc.mod0, acc.mod1, acc.mod2)
> LRstats(acc.mods)
Likelihood summary table:
AIC BIC LR Chisq Df Pr(>Chisq)
acc.mod0 60983 61007 60320 70 < 2.2e-16 ***
acc.mod1 2942 3040 2218 39 < 2.2e-16 ***
acc.mod2 968 1085 227 31 < 2.2e-16 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
>
> ## Binomial (logistic regression) models for result
> ## ------------------------------------------------
> library(car) # for Anova()
Error in library(car) : there is no package called ‘car’
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.8-5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘continuous.Rmd’ using rmarkdown
** Processing: fig/tut05-spine1-1.png
576x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6435 bytes
Input file size = 7293 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5570
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5570
Output IDAT size = 5570 bytes (865 bytes decrease)
Output file size = 5648 bytes (1645 bytes = 22.56% decrease)
** Processing: fig/tut05-spine1-2.png
576x576 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6757 bytes
Input file size = 7612 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5853
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5853
Output IDAT size = 5853 bytes (904 bytes decrease)
Output file size = 5931 bytes (1681 bytes = 22.08% decrease)
** Processing: fig/tut05-cdplot-1.png
480x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8559 bytes
Input file size = 9429 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7743
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7743
Output IDAT size = 7743 bytes (816 bytes decrease)
Output file size = 7821 bytes (1608 bytes = 17.05% decrease)
** Processing: fig/tut05-cdplot1-1.png
480x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9062 bytes
Input file size = 9932 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8249
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8249
Output IDAT size = 8249 bytes (813 bytes decrease)
Output file size = 8327 bytes (1605 bytes = 16.16% decrease)
** Processing: fig/tut05-donner3a-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36234 bytes
Input file size = 36360 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28173
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28173
Output IDAT size = 28173 bytes (8061 bytes decrease)
Output file size = 28251 bytes (8109 bytes = 22.30% decrease)
** Processing: fig/tut05-donner3a-2.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37102 bytes
Input file size = 37228 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31384
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31384
Output IDAT size = 31384 bytes (5718 bytes decrease)
Output file size = 31462 bytes (5766 bytes = 15.49% decrease)
[WARNING] Citeproc: citation ref not found
--- finished re-building ‘continuous.Rmd’
--- re-building ‘creating.Rmd’ using rmarkdown
** Processing: fig/tut01-Arthritis-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24116 bytes
Input file size = 24218 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20043
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20043
Output IDAT size = 20043 bytes (4073 bytes decrease)
Output file size = 20121 bytes (4097 bytes = 16.92% decrease)
Quitting from lines 452-458 [dayton5] (creating.Rmd)
Error: processing vignette 'creating.Rmd' failed with diagnostics:
there is no package called 'plyr'
--- failed re-building ‘creating.Rmd’
--- re-building ‘datasets.Rmd’ using rmarkdown
--- finished re-building ‘datasets.Rmd’
--- re-building ‘demo-housing.Rmd’ using rmarkdown
Quitting from lines 54-57 [unnamed-chunk-1] (demo-housing.Rmd)
Error: processing vignette 'demo-housing.Rmd' failed with diagnostics:
there is no package called 'effects'
--- failed re-building ‘demo-housing.Rmd’
--- re-building ‘loglinear.Rmd’ using rmarkdown
[WARNING] Citeproc: citation ref not found
--- finished re-building ‘loglinear.Rmd’
--- re-building ‘mobility.Rmd’ using rmarkdown
** Processing: fig/mobility-mosaicplot-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24748 bytes
Input file size = 24862 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19192
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19192
Output IDAT size = 19192 bytes (5556 bytes decrease)
Output file size = 19270 bytes (5592 bytes = 22.49% decrease)
** Processing: fig/mobility-mosaic1-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18222 bytes
Input file size = 18324 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15929
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15929
Output IDAT size = 15929 bytes (2293 bytes decrease)
Output file size = 16007 bytes (2317 bytes = 12.64% decrease)
** Processing: fig/mobility-indep-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20467 bytes
Input file size = 20569 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17892
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17892
Output IDAT size = 17892 bytes (2575 bytes decrease)
Output file size = 17970 bytes (2599 bytes = 12.64% decrease)
** Processing: fig/mobility-quasi-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22173 bytes
Input file size = 22275 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19070
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19070
Output IDAT size = 19070 bytes (3103 bytes decrease)
Output file size = 19148 bytes (3127 bytes = 14.04% decrease)
** Processing: fig/mobility-qsymm-mosaic-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25028 bytes
Input file size = 25142 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20913
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20913
Output IDAT size = 20913 bytes (4115 bytes decrease)
Output file size = 20991 bytes (4151 bytes = 16.51% decrease)
** Processing: fig/mobility-topo-mosaic-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26328 bytes
Input file size = 26442 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21945
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21945
Output IDAT size = 21945 bytes (4383 bytes decrease)
Output file size = 22023 bytes (4419 bytes = 16.71% decrease)
** Processing: fig/mobility-UAdiag-mosaic-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27664 bytes
Input file size = 27778 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23074
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23074
Output IDAT size = 23074 bytes (4590 bytes decrease)
Output file size = 23152 bytes (4626 bytes = 16.65% decrease)
--- finished re-building ‘mobility.Rmd’
--- re-building ‘mosaics.Rmd’ using rmarkdown
** Processing: fig/tut04-Arthritis1-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24598 bytes
Input file size = 24712 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20562
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20562
Output IDAT size = 20562 bytes (4036 bytes decrease)
Output file size = 20640 bytes (4072 bytes = 16.48% decrease)
** Processing: fig/tut04-Arthritis2-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22024 bytes
Input file size = 22126 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18353
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18353
Output IDAT size = 18353 bytes (3671 bytes decrease)
Output file size = 18431 bytes (3695 bytes = 16.70% decrease)
** Processing: fig/tut04-glass-mosaic1-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33313 bytes
Input file size = 33439 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28462
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28462
Output IDAT size = 28462 bytes (4851 bytes decrease)
Output file size = 28540 bytes (4899 bytes = 14.65% decrease)
** Processing: fig/tut04-glass-mosaic2-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31736 bytes
Input file size = 31850 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27121
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27121
Output IDAT size = 27121 bytes (4615 bytes decrease)
Output file size = 27199 bytes (4651 bytes = 14.60% decrease)
** Processing: fig/tut04-glass-quasi-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32978 bytes
Input file size = 33104 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28045
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28045
Output IDAT size = 28045 bytes (4933 bytes decrease)
Output file size = 28123 bytes (4981 bytes = 15.05% decrease)
** Processing: fig/tut04-glass-qsymm-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35546 bytes
Input file size = 35672 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29914
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29914
Output IDAT size = 29914 bytes (5632 bytes decrease)
Output file size = 29992 bytes (5680 bytes = 15.92% decrease)
** Processing: fig/tut04-housetasks-mos1-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29767 bytes
Input file size = 29881 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24771
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24771
Output IDAT size = 24771 bytes (4996 bytes decrease)
Output file size = 24849 bytes (5032 bytes = 16.84% decrease)
** Processing: fig/tut04-housetasks-ca-plot-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37384 bytes
Input file size = 37510 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32726
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32726
Output IDAT size = 32726 bytes (4658 bytes decrease)
Output file size = 32804 bytes (4706 bytes = 12.55% decrease)
** Processing: fig/tut04-housetasks-mos2-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29294 bytes
Input file size = 29408 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24625
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24625
Output IDAT size = 24625 bytes (4669 bytes decrease)
Output file size = 24703 bytes (4705 bytes = 16.00% decrease)
--- finished re-building ‘mosaics.Rmd’
--- re-building ‘tests.Rmd’ using rmarkdown
** Processing: fig/tut02-fourfold1-1.png
720x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 76437 bytes
Input file size = 76623 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62452
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62452
Output IDAT size = 62452 bytes (13985 bytes decrease)
Output file size = 62530 bytes (14093 bytes = 18.39% decrease)
** Processing: fig/tut02-doubledecker-1.png
768x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8493 bytes
Input file size = 9363 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7225
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7225
Output IDAT size = 7225 bytes (1268 bytes decrease)
Output file size = 7303 bytes (2060 bytes = 22.00% decrease)
** Processing: fig/tut02-oddsratio-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27792 bytes
Input file size = 27906 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22210
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22210
Output IDAT size = 22210 bytes (5582 bytes decrease)
Output file size = 22288 bytes (5618 bytes = 20.13% decrease)
** Processing: fig/tut02-agreesex-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27690 bytes
Input file size = 27804 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23196
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23196
Output IDAT size = 23196 bytes (4494 bytes decrease)
Output file size = 23274 bytes (4530 bytes = 16.29% decrease)
** Processing: fig/tut02-ca-haireye-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24086 bytes
Input file size = 24188 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19708
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19708
Output IDAT size = 19708 bytes (4378 bytes decrease)
Output file size = 19786 bytes (4402 bytes = 18.20% decrease)
[WARNING] Citeproc: citation fig not found
[WARNING] Citeproc: citation ref not found
--- finished re-building ‘tests.Rmd’
SUMMARY: processing the following files failed:
‘creating.Rmd’ ‘demo-housing.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.8-5
Check: HTML version of manual
Result: NOTE
Skipping checking math rendering: package 'V8' unavailable
Flavor: r-release-linux-x86_64