Last updated on 2024-11-03 11:49:16 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.0 | 8.42 | 103.59 | 112.01 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.0 | 0.36 | 1.44 | 1.80 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.0 | 192.03 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.0 | 179.97 | OK | |||
| r-devel-windows-x86_64 | 0.3.0 | 10.00 | 107.00 | 117.00 | OK | |
| r-patched-linux-x86_64 | 0.3.0 | 9.00 | 96.40 | 105.40 | OK | |
| r-release-linux-x86_64 | 0.3.0 | 8.28 | 74.11 | 82.39 | ERROR | |
| r-release-macos-arm64 | 0.3.0 | 51.00 | OK | |||
| r-release-macos-x86_64 | 0.3.0 | 83.00 | OK | |||
| r-release-windows-x86_64 | 0.3.0 | 10.00 | 110.00 | 120.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.0 | 54.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.3.0 | 111.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.3.0 | 13.00 | 138.00 | 151.00 | OK |
Version: 0.3.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'Seurat', 'DESeq2', 'RcppAnnoy', 'SeuratObject'
Flavor: r-release-linux-x86_64
Version: 0.3.0
Check: examples
Result: ERROR
Running examples in ‘cellpypes-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: find_knn
> ### Title: Find approximate k-nearest neighbors
> ### Aliases: find_knn
>
> ### ** Examples
>
> # Imagine we have 30 cells and 100 features:
> fmat <- matrix(rnorm(3000), ncol=30)
> nn <- find_knn(fmat,k=15)
Error in find_knn(fmat, k = 15) :
requireNamespace("RcppAnnoy", quietly = TRUE) is not TRUE
Calls: find_knn -> stopifnot
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cellpypes)
>
> test_check("cellpypes")
[ FAIL 4 | WARN 5 | SKIP 0 | PASS 44 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-find_knn.R:4:3'): docu example works ───────────────────────────
Error in `find_knn(fmat, k = 15)`: requireNamespace("RcppAnnoy", quietly = TRUE) is not TRUE
Backtrace:
▆
1. └─cellpypes::find_knn(fmat, k = 15) at test-find_knn.R:4:3
2. └─base::stopifnot(requireNamespace("RcppAnnoy", quietly = TRUE))
── Error ('test-neighbor_pooling.R:3:1'): (code run outside of `test_that()`) ──
Error in `find_knn(dummy_dat, k = 15)`: requireNamespace("RcppAnnoy", quietly = TRUE) is not TRUE
Backtrace:
▆
1. └─cellpypes::find_knn(dummy_dat, k = 15) at test-neighbor_pooling.R:3:1
2. └─base::stopifnot(requireNamespace("RcppAnnoy", quietly = TRUE))
── Failure ('test-pseudobulk.R:10:3'): class_to_deseq2 example working ─────────
`{ ... }` threw an unexpected error.
Message: Install DESeq2 to use class_to_deseq2 function.
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-pseudobulk.R:10:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─cellpypes::class_to_deseq2(obj, meta_data, "T", ~treatment) at test-pseudobulk.R:20:7
── Error ('test-pseudobulk.R:61:3'): class_to_deseq2 stops gracefully if class has zero cells. ──
Error in `class_to_deseq2(dds, meta_data, "T", ~treatment)`: Install DESeq2 to use class_to_deseq2 function.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-pseudobulk.R:61:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─cellpypes::class_to_deseq2(dds, meta_data, "T", ~treatment)
[ FAIL 4 | WARN 5 | SKIP 0 | PASS 44 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64