Last updated on 2024-11-02 23:48:30 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.1 | 7.72 | 162.43 | 170.15 | NOTE | --no-vignettes |
| r-devel-linux-x86_64-debian-gcc | 1.4.1 | 5.22 | 112.58 | 117.80 | NOTE | --no-vignettes |
| r-devel-linux-x86_64-fedora-clang | 1.4.1 | 585.34 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4.1 | 547.07 | ERROR | |||
| r-devel-windows-x86_64 | 1.4.1 | 11.00 | 181.00 | 192.00 | NOTE | --no-vignettes |
| r-patched-linux-x86_64 | 1.4.1 | 7.59 | 150.49 | 158.08 | NOTE | --no-vignettes |
| r-release-linux-x86_64 | 1.4.1 | 0.56 | 1.78 | 2.34 | ERROR | --no-vignettes |
| r-release-macos-arm64 | 1.4.1 | 398.00 | NOTE | |||
| r-release-macos-x86_64 | 1.4.1 | 731.00 | NOTE | |||
| r-release-windows-x86_64 | 1.4.1 | 10.00 | 188.00 | 198.00 | NOTE | --no-vignettes |
| r-oldrel-macos-arm64 | 1.4.1 | 417.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.4.1 | 1371.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.4.1 | 12.00 | 228.00 | 240.00 | OK | --no-vignettes |
Version: 1.4.1
Flags: --no-vignettes
Check: Rd files
Result: NOTE
checkRd: (-1) BD_shift.Rd:67-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BD_shift.Rd:74-77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BD_shift.Rd:78-82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BD_shift.Rd:83-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data-physeq_rep3.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data-physeq_rep3.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data-physeq_rep3.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data-physeq_rep3.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data-physeq_rep3.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data-physeq_rep3.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) heavy_SIP.Rd:69-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) heavy_SIP.Rd:72-75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) heavy_SIP.Rd:76-79: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-windows-x86_64
Version: 1.4.1
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘igraph’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.4.1
Check: Rd files
Result: NOTE
checkRd: (-1) BD_shift.Rd:67-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BD_shift.Rd:74-77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BD_shift.Rd:78-82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BD_shift.Rd:83-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data-physeq_rep3.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data-physeq_rep3.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data-physeq_rep3.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data-physeq_rep3.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data-physeq_rep3.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data-physeq_rep3.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) heavy_SIP.Rd:69-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) heavy_SIP.Rd:72-75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) heavy_SIP.Rd:76-79: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64
Version: 1.4.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘BD_shifts.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/BD_shifts_files/figure-html/plot_wmean-1.png
672x336 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13804 bytes
Input file size = 14674 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12275
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12275
Output IDAT size = 12275 bytes (1529 bytes decrease)
Output file size = 12353 bytes (2321 bytes = 15.82% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/BD_shifts_files/figure-html/wmean_m_plot-1.png
672x336 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35100 bytes
Input file size = 35226 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27976
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27976
Output IDAT size = 27976 bytes (7124 bytes decrease)
Output file size = 28054 bytes (7172 bytes = 20.36% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/BD_shifts_files/figure-html/shift_plot-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 58678 bytes
Input file size = 58840 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44886
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44886
Output IDAT size = 44886 bytes (13792 bytes decrease)
Output file size = 44964 bytes (13876 bytes = 23.58% decrease)
--- finished re-building ‘BD_shifts.Rmd’
--- re-building ‘HTSSIP_intro.Rmd’ using rmarkdown
--- finished re-building ‘HTSSIP_intro.Rmd’
--- re-building ‘HTSSIP_sim.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/HTSSIP_sim_files/figure-html/unnamed-chunk-12-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24341 bytes
Input file size = 24443 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19131
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19131
Output IDAT size = 19131 bytes (5210 bytes decrease)
Output file size = 19209 bytes (5234 bytes = 21.41% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/HTSSIP_sim_files/figure-html/unnamed-chunk-14-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24466 bytes
Input file size = 24568 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19208
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19208
Output IDAT size = 19208 bytes (5258 bytes decrease)
Output file size = 19286 bytes (5282 bytes = 21.50% decrease)
--- finished re-building ‘HTSSIP_sim.Rmd’
--- re-building ‘MW_HR_SIP.Rmd’ using rmarkdown
Quitting from lines 76-77 [unnamed-chunk-4] (MW_HR_SIP.Rmd)
Error: processing vignette 'MW_HR_SIP.Rmd' failed with diagnostics:
could not find function "sample_data"
--- failed re-building ‘MW_HR_SIP.Rmd’
--- re-building ‘beta_diversity_ordinations.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/beta_diversity_ordinations_files/figure-html/unnamed-chunk-9-1.png
720x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 112857 bytes
Input file size = 113091 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93785
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93785
Output IDAT size = 93785 bytes (19072 bytes decrease)
Output file size = 93863 bytes (19228 bytes = 17.00% decrease)
--- finished re-building ‘beta_diversity_ordinations.Rmd’
--- re-building ‘heavy_SIP.Rmd’ using rmarkdown
Quitting from lines 64-65 [unnamed-chunk-4] (heavy_SIP.Rmd)
Error: processing vignette 'heavy_SIP.Rmd' failed with diagnostics:
could not find function "sample_data"
--- failed re-building ‘heavy_SIP.Rmd’
--- re-building ‘qSIP.Rmd’ using rmarkdown
Quitting from lines 96-101 [unnamed-chunk-7] (qSIP.Rmd)
Error: processing vignette 'qSIP.Rmd' failed with diagnostics:
could not find function "sample_data"
--- failed re-building ‘qSIP.Rmd’
--- re-building ‘quant_incorp.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/quant_incorp_files/figure-html/unnamed-chunk-10-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11794 bytes
Input file size = 11884 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9761
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9761
Output IDAT size = 9761 bytes (2033 bytes decrease)
Output file size = 9839 bytes (2045 bytes = 17.21% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/quant_incorp_files/figure-html/unnamed-chunk-11-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3884 bytes
Input file size = 4697 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3489
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3489
Output IDAT size = 3489 bytes (395 bytes decrease)
Output file size = 3567 bytes (1130 bytes = 24.06% decrease)
--- finished re-building ‘quant_incorp.Rmd’
SUMMARY: processing the following files failed:
‘MW_HR_SIP.Rmd’ ‘heavy_SIP.Rmd’ ‘qSIP.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.4.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘BD_shifts.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/BD_shifts_files/figure-html/plot_wmean-1.png
672x336 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13804 bytes
Input file size = 14674 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12275
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12275
Output IDAT size = 12275 bytes (1529 bytes decrease)
Output file size = 12353 bytes (2321 bytes = 15.82% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/BD_shifts_files/figure-html/wmean_m_plot-1.png
672x336 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35340 bytes
Input file size = 35466 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28239
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28239
Output IDAT size = 28239 bytes (7101 bytes decrease)
Output file size = 28317 bytes (7149 bytes = 20.16% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/BD_shifts_files/figure-html/shift_plot-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 57774 bytes
Input file size = 57936 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44664
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44664
Output IDAT size = 44664 bytes (13110 bytes decrease)
Output file size = 44742 bytes (13194 bytes = 22.77% decrease)
--- finished re-building ‘BD_shifts.Rmd’
--- re-building ‘HTSSIP_intro.Rmd’ using rmarkdown
--- finished re-building ‘HTSSIP_intro.Rmd’
--- re-building ‘HTSSIP_sim.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/HTSSIP_sim_files/figure-html/unnamed-chunk-12-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24341 bytes
Input file size = 24443 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19131
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19131
Output IDAT size = 19131 bytes (5210 bytes decrease)
Output file size = 19209 bytes (5234 bytes = 21.41% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/HTSSIP_sim_files/figure-html/unnamed-chunk-14-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24466 bytes
Input file size = 24568 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19208
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19208
Output IDAT size = 19208 bytes (5258 bytes decrease)
Output file size = 19286 bytes (5282 bytes = 21.50% decrease)
--- finished re-building ‘HTSSIP_sim.Rmd’
--- re-building ‘MW_HR_SIP.Rmd’ using rmarkdown
Quitting from lines 76-77 [unnamed-chunk-4] (MW_HR_SIP.Rmd)
Error: processing vignette 'MW_HR_SIP.Rmd' failed with diagnostics:
could not find function "sample_data"
--- failed re-building ‘MW_HR_SIP.Rmd’
--- re-building ‘beta_diversity_ordinations.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/beta_diversity_ordinations_files/figure-html/unnamed-chunk-9-1.png
720x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 113058 bytes
Input file size = 113292 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93806
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93806
Output IDAT size = 93806 bytes (19252 bytes decrease)
Output file size = 93884 bytes (19408 bytes = 17.13% decrease)
--- finished re-building ‘beta_diversity_ordinations.Rmd’
--- re-building ‘heavy_SIP.Rmd’ using rmarkdown
Quitting from lines 64-65 [unnamed-chunk-4] (heavy_SIP.Rmd)
Error: processing vignette 'heavy_SIP.Rmd' failed with diagnostics:
could not find function "sample_data"
--- failed re-building ‘heavy_SIP.Rmd’
--- re-building ‘qSIP.Rmd’ using rmarkdown
Quitting from lines 96-101 [unnamed-chunk-7] (qSIP.Rmd)
Error: processing vignette 'qSIP.Rmd' failed with diagnostics:
could not find function "sample_data"
--- failed re-building ‘qSIP.Rmd’
--- re-building ‘quant_incorp.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/quant_incorp_files/figure-html/unnamed-chunk-10-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11794 bytes
Input file size = 11884 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9761
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9761
Output IDAT size = 9761 bytes (2033 bytes decrease)
Output file size = 9839 bytes (2045 bytes = 17.21% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/HTSSIP.Rcheck/vign_test/HTSSIP/vignettes/quant_incorp_files/figure-html/unnamed-chunk-11-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3884 bytes
Input file size = 4697 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3489
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3489
Output IDAT size = 3489 bytes (395 bytes decrease)
Output file size = 3567 bytes (1130 bytes = 24.06% decrease)
--- finished re-building ‘quant_incorp.Rmd’
SUMMARY: processing the following files failed:
‘MW_HR_SIP.Rmd’ ‘heavy_SIP.Rmd’ ‘qSIP.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.4.1
Flags: --no-vignettes
Check: package dependencies
Result: ERROR
Packages required but not available: 'ape', 'plyr', 'DESeq2', 'phyloseq'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-linux-x86_64