Package: QsRutils
Type: Package
Title: R Functions Useful for Community Ecology
Version: 0.2.1
Authors@R: person("John", "Quensen", email = "quensenj@msu.edu",
    role = c("aut", "cre", "cph"))
Description: A collection of utility functions for community ecology analyses,
    with emphasis on workflows using the 'phyloseq' and 'vegan' packages.
    Includes functions for normalizing OTU tables, computing alpha diversity
    via rarefaction (using a fast C++ implementation), differential abundance
    comparisons with compact letter displays, primer checking for amplicon
    sequencing, plotting QIIME 2/DADA2 generated transition stats and miscellaneous helpers for ordination plots and taxonomic
    name formatting.
Depends: R (>= 4.1.0)
Imports: agricolae, ape, Biostrings, dada2, data.table, dplyr, ggplot2,
        insect, multcompView, magrittr, phyloseq, Rcpp, readr, scales,
        ShortRead, SRS, stringr, tibble, vegan (>= 2.4-6)
LinkingTo: Rcpp
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Suggests: dunn.test, knitr, rmarkdown, reshape2, testthat (>= 3.0.0)
VignetteBuilder: knitr
URL: https://github.com/jfq3/QsRutils
BugReports: https://github.com/jfq3/QsRutils/issues
Config/testthat/edition: 3
Additional_repositories: https://bioconductor.org/packages/release/bioc
NeedsCompilation: yes
Packaged: 2026-05-09 20:49:14 UTC; johnq
Author: John Quensen [aut, cre, cph]
Maintainer: John Quensen <quensenj@msu.edu>
Repository: CRAN
Date/Publication: 2026-05-13 19:30:02 UTC
Built: R 4.5.3; x86_64-w64-mingw32; 2026-06-24 04:11:23 UTC; windows
Archs: x64
