check_filter_seq        Filter invalid bases in nucleotide sequences
chem_correct            Corrections of melting temperature with
                        chemical substances
compare_groups          Compare numeric GRanges metadata across groups
complement_fast         Fast complement and reverse complement
coor_to_genomic_ranges
                        Convert genomic coordinate strings to a GRanges
                        object
ecoli_rep_hotspots      E. coli K-12 MG1655 replication-associated
                        hotspot annotations
fa_to_genomic_ranges    Convert FASTA file to GenomicRanges object
gc                      Calculate G and C content of nucleotide
                        sequences
generate_complement     Generate complementary sequence
integrate_granges       Integrate a Tm GRanges with multi-omic feature
                        ranges
make_genomiccoord       Generate sliding-window genomic coordinate
                        strings for Tm calculation
plot_genome_track       Plot genome tracks in linear or circular layout
plot_tm                 Compare Tm distributions across groups
print.TmCalculator      Prints melting temperature from a
                        'TmCalculator' object
salt_correction         Corrections of melting temperature with salt
                        concentration
thermodynamic_gc_params
                        Thermodynamic parameters for GC-based Tm
                        calculation methods
thermodynamic_nn_params
                        Thermodynamic Tables for Nucleic Acid
                        Hybridization
tm_calculate            Calculate melting temperature using multiple
                        methods
tm_gc                   Calculate the melting temperature using
                        empirical formulas based on GC content
tm_nn                   Calculate melting temperature using nearest
                        neighbor thermodynamics
tm_wallace              Calculate the melting temperature using the
                        'Wallace rule'
to_genomic_ranges_fast
                        Convert input sequences to a GRanges object
                        (fast backend)
vec_to_genomic_ranges   Convert sequence strings to GenomicRanges
                        object
