Package: RVA
Title: RNAseq Visualization Automation
Version: 0.0.5
Authors@R: 
    person(given = "Xingpeng",
           family = "Li",
           role = c("aut", "cre"),
           email = "xingpeng.li@pfizer.com",
           comment = c(ORCID = "0000-0002-1331-1225"))
Description: Automate downstream visualization & pathway analysis in RNAseq analysis. 'RVA' is a collection of functions that efficiently visualize RNAseq differential expression analysis result from summary statistics tables. It also utilize the Fisher's exact test to evaluate gene set or pathway enrichment in a convenient and efficient manner.
Maintainer: Xingpeng Li <xingpeng.li@pfizer.com>
URL: https://github.com/THERMOSTATS/RVA
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews:
Imports: GSVAdata (>= 1.22.0), clusterProfiler (>= 3.15.1), data.table
        (>= 1.12.8), edgeR (>= 3.28.1), org.Hs.eg.db (>= 3.10.0),
        ComplexHeatmap (>= 2.2.0), GSEABase (>= 1.48.0), circlize (>=
        0.4.10), dplyr (>= 1.0.0), ggplot2 (>= 3.3.2), ggpubr (>=
        0.4.0), grid (>= 3.6.1), gridExtra (>= 2.3), haven (>= 2.3.1),
        msigdbr (>= 7.1.1), plotly (>= 4.9.2.1), purrr (>= 0.3.4),
        rWikiPathways (>= 1.6.1), stringr (>= 1.4.0), tibble, tidyr (>=
        1.1.0), XML, rlang
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2021-11-01 20:48:52 UTC; lix410
Author: Xingpeng Li [aut, cre] (<https://orcid.org/0000-0002-1331-1225>)
Repository: CRAN
Date/Publication: 2021-11-01 21:40:02 UTC
Built: R 4.3.3; ; 2025-04-07 04:05:02 UTC; windows
