# QTL EM Algorithm Mapping and Hotspots Detection

## Documentation for package ‘QTLEMM’ version 3.0.1

- DESCRIPTION file.

## Help Pages

D.make | Generate D Matrix
EM.MIM | EM Algorithm for QTL MIM
EM.MIMv | EM Algorithm for QTL MIM with Asymptotic Variance-Covariance Matrix
EQF.permu | EQF Permutation
EQF.plot | EQF plot
IM.search | QTL search by IM
LOD.QTLdetect | QTL Detect by LOD
LRTthre | LRT Threshold
MIM.points | QTL Short Distance Correction by MIM
MIM.search | QTL search by MIM
progeny | Progeny Simulation
Q.make | Generate Q Matrix
Qhot | QTL Hotspot
Qhot.EQF | EQF Matrix Conversion