Package: PSSMCOOL
Type: Package
Title: Features Extracted from Position Specific Scoring Matrix (PSSM)
Version: 0.2.4
Imports: utils, gtools, infotheo, phonTools, dtt
Authors@R: c(
    person("Javad", "zahiri", email = "zahiri@modares.ac.ir", role = "aut"),
    person("Alireza", "mohammadi", email = "alireza691111@gmail.com", role = c("aut","cre")),
    person("Saber", "mohammadi", email = "sabermohammdi.1994@gmail.com", role = "aut"))
Maintainer: Alireza mohammadi <alireza691111@gmail.com>
Depends: R (>= 3.1.0)
Description: Returns almost all features that has been extracted from Position Specific 
             Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length) 
             and 20 columns produced by 'PSI-BLAST' which is a program to produce
             PSSM Matrix from multiple sequence alignment of proteins
             see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some 
             of these features are described in Zahiri, J., et al.(2013)
             <DOI:10.1016/j.ygeno.2013.05.006>,
             Saini, H., et al.(2016)
             <DOI:10.17706/jsw.11.8.756-767>,
             Ding, S., et al.(2014)
             <DOI:10.1016/j.biochi.2013.09.013>,
             Cheng, C.W., et al.(2008)
             <DOI:10.1186/1471-2105-9-S12-S6>,
             Juan, E.Y., et al.(2009)
             <DOI:10.1109/CISIS.2009.194>. 
License: GPL-3
URL: https://github.com/BioCool-Lab/PSSMCOOL
BugReports: https://github.com/BioCool-Lab/PSSMCOOL/issues
Encoding: UTF-8
RoxygenNote: 7.1.2
Suggests: testthat, spelling, waveslim, knitr, rmarkdown
Language: en-US
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-01-04 10:42:14 UTC; LapTop
Author: Javad zahiri [aut],
  Alireza mohammadi [aut, cre],
  Saber mohammadi [aut]
Repository: CRAN
Date/Publication: 2022-01-04 13:20:05 UTC
Built: R 4.3.3; ; 2025-04-07 00:40:33 UTC; windows
