Package: MetaIntegrator
Type: Package
Title: Meta-Analysis of Gene Expression Data
Version: 2.1.3
Date: 2020-02-25
Author: Winston A. Haynes, Francesco Vallania, Aurelie Tomczak, Timothy Sweeney,
    Erika Bongen, Aditya M. Rao, Purvesh Khatri
Maintainer: Aditya M. Rao <adityamr@stanford.edu>
Description: A pipeline for the meta-analysis  of gene expression data. We have
	assembled several analysis and plot functions to
    perform integrated multi-cohort analysis of gene expression data (meta-
    analysis). Methodology described in:
	<http://biorxiv.org/content/early/2016/08/25/071514>.
License: LGPL
biocViews:
Imports: BiocManager, rmeta, multtest, ggplot2, parallel, Rmisc,
        gplots, Biobase, RMySQL, DBI, stringr, preprocessCore,
        GEOquery, GEOmetadb, RSQLite, data.table, ggpubr, ROCR, zoo,
        pracma, COCONUT, Metrics, manhattanly, DT, pheatmap, plyr,
        boot, dplyr, reshape2, rmarkdown, AnnotationDbi, HGNChelper,
        magrittr, readr, plotly, httpuv
Suggests: BiocStyle, knitr, RUnit, BiocGenerics, snplist, magick
VignetteBuilder: knitr
LazyData: true
RoxygenNote: 6.1.1
Depends: R (>= 3.6)
Encoding: UTF-8
URL: http://biorxiv.org/content/early/2016/08/25/071514
NeedsCompilation: no
Packaged: 2020-02-25 12:56:02 UTC; adityamr
Repository: CRAN
Date/Publication: 2020-02-26 13:00:11 UTC
Built: R 4.2.3; ; 2024-04-24 03:51:34 UTC; windows
