# Macromolecular Assemblies from Co-Elution Profile (MACP)

## Documentation for package ‘MACP’ version 0.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

calculate_PPIscore | Calculate Pairwise Protein Profile Similarity using Different Metrics
cluster_tuning | ClusterONE Hyperparameters Tuning
Clust_Valid | Cluster Evaluation by External Measures
data_filtering | Data Filtering
EliminateCpxRedundance | Hierarchical Clustering of Modules
enrichmentCPX | Functional Enrichment Analysis for Predicted Complexes
ensemble_model | Predict Interactions via Ensemble Learning Method
exampleData | Demo CF-MS data
generate_refInt | Generate Class Labels for Data Input Based on Gold Reference Set
getCPX | Fetch Complexes from the CORUM Database
get_clusters | Predict Complexes
get_DenoisedNet | Denoising Predicted Protein-Protein Interactions
impute_MissingData | Impute missing Values in Elution Profile Matrix
keepMT | Keep Mitochondrial (mt) Proteins
MCL_clustering | MCL clustering
MCL_tuning | MCL Hyperparameters Tuning
orthMappingCpx | Protein Complex Ortholog Mapping
predPPI_MACP | Predict Protein-Protein Interactions and Putative Complexes
refcpx | CORUM reference complexes
scaling | Column and Row-wise Normalization
subcellular.mtPPI | Keep Mitochondrial (mt) Proteins