Package: APackOfTheClones
Type: Package
Title: Visualization of Clonal Expansion for Single Cell Immune
        Profiles
Version: 1.2.0
Authors@R: c(person("Qile", "Yang", email = "qile.yang@berkeley.edu", role = c("cre","aut","cph")))
Maintainer: Qile Yang <qile.yang@berkeley.edu>
Description: Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) <doi:10.1126/sciimmunol.abg6356>.
BugReports: https://github.com/Qile0317/APackOfTheClones/issues/
Depends: R (>= 4.1.0)
License: MIT + file LICENSE
Encoding: UTF-8
Language: en-US
LazyData: false
Suggests: cowplot, covr, knitr, rmarkdown, sf, spelling, testthat (>=
        3.0.0), vdiffr
Config/testthat/edition: 3
Imports: dplyr, ggforce, ggplot2, grDevices, hash, lifecycle, magrittr,
        methods, Rcpp, rlang, Seurat, SeuratObject
RoxygenNote: 7.3.1
URL: https://qile0317.github.io/APackOfTheClones/
LinkingTo: Rcpp
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2024-04-16 09:36:49 UTC; qile
Author: Qile Yang [cre, aut, cph]
Repository: CRAN
Date/Publication: 2024-04-16 09:50:02 UTC
Built: R 4.2.3; x86_64-w64-mingw32; 2024-04-24 03:32:20 UTC; windows
ExperimentalWindowsRuntime: ucrt
Archs: x64
