Package: RaceID
Title: Identification of Cell Types and Inference of Lineage Trees from
        Single-Cell RNA-Seq Data
Version: 0.3.0
Date: 2023-03-11
Author: Dominic Grün <dominic.gruen@gmail.com>
Maintainer: Dominic Grün <dominic.gruen@gmail.com>
Description: Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <DOI:10.1038/nmeth.4662>.
Depends: R (>= 3.5.0)
biocViews:
Imports: coop, compiler, cluster, FateID, FNN, fpc, ggplot2, grDevices,
        harmony, ica, igraph, irlba, leiden, locfit, methods, MASS,
        Matrix, matrixStats, parallel, pheatmap, princurve, quadprog,
        randomForest, runner, Rcpp, RColorBrewer, Rtsne, umap, vegan
LinkingTo: Rcpp (>= 0.11.0)
Suggests: batchelor, DESeq2, knitr, rmarkdown, SingleCellExperiment,
        slingshot, SummarizedExperiment
VignetteBuilder: knitr
SystemRequirements: C++17
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.1
NeedsCompilation: yes
Packaged: 2023-03-11 09:03:30 UTC; d.grun
Repository: CRAN
Date/Publication: 2023-03-13 12:10:02 UTC
Built: R 4.1.3; x86_64-w64-mingw32; 2023-04-17 19:23:44 UTC; windows
Archs: i386, x64
