# Read and Analyze 'MetIDQ&trade;' Software Output Files

## Documentation for package ‘MetAlyzer’ version 0.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

createPlottingData | Create plotting data
createPlottingData-method | Create plotting data
filterMetabolites | Filter metabolites
filterMetabolites-method | Filter metabolites
filterMetaData | Filter meta data
filterMetaData-method | Filter meta data
imputePlottingData | Impute plotting data
imputePlottingData-method | Impute plotting data
metabolites | Get metabolites
metabolites-method | Get metabolites
metaData | Get meta data
metaData-method | Get meta data
MetAlyzer | A S4 class to read and analyze 'MetIDQ' output
MetAlyzer-class | A S4 class to read and analyze 'MetIDQ' output
MetAlyzerDataset | Open file and read data
performANOVA | ANOVA
performANOVA-method | ANOVA
plottingData | Get plotting data
plottingData-method | Get plotting data
quantStatus | Get quantification status
quantStatus-method | Get quantification status
rawData | Get raw data
rawData-method | Get raw data
renameMetaData | Rename meta data
renameMetaData-method | Rename meta data
resetMetabolites | Reset metabolites
resetMetabolites-method | Reset metabolites
resetMetaData | Reset meta data
resetMetaData-method | Reset meta data
setPlottingData | Update plotting data
setPlottingData-method | Update plotting data
show-method | Show a 'MetAlyzer' object
summariseQuantData | Summarize quantification status
summariseQuantData-method | Summarize quantification status
transformPlottingData | Transform plotting data
transformPlottingData-method | Transform plotting data
updateMetaData | Update meta data
updateMetaData-method | Update meta data