# Automated Classification of Mass Spectra

## Documentation for package ‘MSclassifR’ version 0.3.2

- DESCRIPTION file.

## Help Pages

CitrobacterRKImetadata | Metadata of mass spectra corresponding to the bacterial species _Citrobacter_ sp. from The Robert Koch-Institute (RKI) database of microbial MALDI-TOF mass spectra
CitrobacterRKIspectra | Mass spectra corresponding to the bacterial species _Citrobacter_ sp. from The Robert Koch-Institute (RKI) database of microbial MALDI-TOF mass spectra
LogReg | Estimation of a multinomial logistic regression to predict the category to which a mass spectrum belongs
MSclassifR | Automated classification of mass spectra
PeakDetection | Detection of peaks in 'MassSpectrum' objects.
PlotSpectra | Plot mass spectra with detected peaks
PredictFastClass | Prediction of the category to which a mass spectrum belongs using linear regressions of mass spectra.
PredictLogReg | Prediction of the category to which a mass spectrum belongs from a multinomial logistic regression model
SelectionVar | Variable selection using random forests, logistic regression methods or sparse partial least squares discriminant analysis (sPLS-DA).
SelectionVarStat | Variable selection using statistical tests. Estimating the number of discriminant features (mass-over-chage values).
SignalProcessing | Function performing post acquisition signal processing