Package: HTSSIP
Type: Package
Title: High Throughput Sequencing of Stable Isotope Probing Data
        Analysis
Version: 1.4.1
Authors@R: c(
    person("Nicholas", "Youngblut", email="nyoungb2@gmail.com", role=c("aut")),
    person("Samuel", "Barnett", email="seb369@cornell.edu", role=c("cre", "ctb"))
    )
Maintainer: Samuel Barnett <seb369@cornell.edu>
Description: Functions for analyzing high throughput sequencing 
    stable isotope probing (HTS-SIP) data.
    Analyses include high resolution stable isotope probing (HR-SIP),
    multi-window high resolution stable isotope probing (MW-HR-SIP), 
    and quantitative stable isotope probing (q-SIP). 
License: GPL-2 | file LICENSE
LazyData: TRUE
Depends: R (>= 3.4.0)
Imports: igraph(>= 1.1.2), ape(>= 4.1), magrittr (>= 1.5), stringr (>=
        1.2.0), plyr (>= 1.8.4), dplyr (>= 0.7.4), tidyr (>= 0.7.2),
        ggplot2 (>= 2.2.1), vegan (>= 2.4.0), DESeq2 (>= 1.16.1),
        phyloseq (>= 1.20.0), coenocliner (>= 0.2.2), lazyeval(>=
        0.2.0)
RoxygenNote: 6.1.1
Encoding: UTF-8
Suggests: testthat, knitr, rmarkdown, doParallel
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-09-13 20:09:39 UTC; sambarnett
Author: Nicholas Youngblut [aut],
  Samuel Barnett [cre, ctb]
Repository: CRAN
Date/Publication: 2019-09-13 22:30:02 UTC
Built: R 4.1.3; ; 2023-04-17 18:14:41 UTC; windows
