---
title: "Materials Processing"
author: "Abhishek Daundkar, Alp Sehirlioglu"
date: "`r Sys.Date()`"
output: rmarkdown::html_vignette
vignette: >
  %\VignetteIndexEntry{Materials Processing}
  %\VignetteEngine{knitr::rmarkdown}
  %\VignetteEncoding{UTF-8}
---

## Materials Processing JSON-LD Description

The Materials Processing JSON-LD template is designed based on the collected data from Material Science department. The materials processing techniques and parameters were captured in form of csv file. The techniques that are specified in the file are related to different aspects of materials processing and a maximum of 3 parameters are captured. A detailed structure is illustrated in the schema diagram. 

## Use R package FAIRmaterials to creating JSON-LD for Materials Processing

```{r, message=FALSE, eval=FALSE}
library(FAIRmaterials)

# Create R data frame for xrd
materialsprocessing <- data.frame(
  'sinteringTemperature' = c(73.96982466, 88.4325155),
  'sinteringPressure' = c(86.04484907,90.87423125), 
  'sinteringAtmosphere' = c(28.61041584,91.68762828),
  'thermalCuringTemperature'= c(55.65865317,84.19817531),
  'thermalCuringPressure' = c(31.68762174,6.547410211),
  'thermalCuringDuration' = c(93.95743642,41.26231069),
  'etchingTemperature' = c(91.9706205,16.14196046),
  'etchingDwellTime' = c(45.58118615,8.525806568),
  'etchingRampRates'= c(73.99122612,83.11668233)
)

# This will generate JSON-LD file for the example data in R
output <- fairify_data(materialsprocessing, domain = 'MaterialsProcessing')
```

## Use Python package fairmaterials to create JSON-LD for XRD

```{r, message=FALSE, eval=FALSE, python.reticulate = FALSE}
from fairmaterials.fairify_data import *
import pandas as pd

# create python data frame for xrd
data = {'sinteringTemperature' : [73.96982466, 88.4325155],
'sinteringPressure' : [86.04484907, 90.87423125], 
'sinteringAtmosphere' : [28.61041584, 91.68762828],
'thermalCuringTemperature' : [55.65865317, 84.19817531],
'thermalCuringPressure' : [31.68762174, 6.547410211],
'thermalCuringDuration' : [93.95743642, 41.26231069],
'etchingTemperature' : [91.9706205, 16.14196046],
'etchingDwellTime' : [45.58118615, 8.525806568],
'etchingRampRates': [73.99122612, 83.11668233]
       }


materialsprocessing = pd.DataFrame(data)

# This will generate JSON-LD file for the example data in Python
fairify_data(materialsprocessing,'MaterialsProcessing')

```

## Materials Processing schema diagram

```{r, out.width="800px", echo=FALSE}
knitr::include_graphics("materialsProcessing.drawio.png")
```

## Acknowledgment

This material is supported by the NSF Cyberinfrastructure for Sustained Scientific Innovation (CSSI) umbrella program. In collaboration with International Center for Diffraction Data (ICDD).
