# Ancient Demographic Modelling Using Radiocarbon

## Documentation for package ‘ADMUR’ version 1.0.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

ADMUR | ADMUR R package
bluhm2421 | Radiocarbon dataset from Bluhm and Surovell 2018
bryson1848 | Radiocarbon dataset from Bryson et al. 2006
checkData | Checks a dataset for obvious clangers
convertPars | Converts parameters to x,y coordinates (date and pdf) that describe a model
CPLparsToHinges | Converts CPL parameters (0 to 1) into hinge (x,y) coordinates (date and pdf) that describe a model
data1 | Toy radiocarbon dataset
data2 | Toy radiocarbon dataset
data3 | Toy radiocarbon dataset
estimateDataDomain | Estimates the calendar date domain of a 14C dataset.
intcal13 | Northern hemisphere 2013 calibration curve
intcal20 | Northern hemisphere 2020 calibration curve
loglik | Calculates the log likelihood of a population model, given a calibrated date PD matrix
makeCalArray | Makes a calibration curve probability array
mcmc | Makes a MCMC chain using the Metropolis-Hastings algorithm.
objectiveFunction | Objective function to be minimised in a search. Returns the negative log likelihood.
phaseCalibrator | Generates an SPD for each phase in a dataset
plotCalArray | Plots a calibration curve probability array
plotPD | Plots a calibrated PD of a single date, or SPD of multiple dates, or multiple SPDs
plotSimulationSummary | Plots a summary of the SPD simulation test
relativeRate | Calculates the relative growth (or decline) rate per generation.
SAAD | Radiocarbon dataset for South American Arid Diagonal (SAAD)
shcal13 | Southern hemisphere 2013 calibration curve
shcal20 | Southern hemisphere 2020 calibration curve
simulateCalendarDates | Converts calendar dates to 14C dates
sinewavePDF | PDF of a truncated sinusoidal curve
SPDsimulationTest | Goodness of Fit test, using SPD simulation
summedCalibrator | Generates a summed probability distribution (SPD) of calibrated dates
summedCalibratorWrapper | Quick calibration of dates, without the need to choose a date range or generate a CalArray.
summedPhaseCalibrator | Generates a summed probability distribution (SPD) after phasing dates
toy | Toy population model
uncalibrateCalendarDates | Converts calendar dates to 14C dates