# Siena - Simulation Investigation for Empirical Network Analysis

## Documentation for package ‘RSiena’ version 1.3.0.1

- DESCRIPTION file.

## Help Pages

A B C D E F G H I M N O P R S T U V W X

RSiena-package | Simulation Investigation for Empirical Network Analysis

## -- A --

allEffects | Internal data frame used to construct effect objects.

## -- B --

BehaviorDistribution | Auxiliary functions for goodness of fit assessment by 'sienaGOF'
behaviorExtraction | Auxiliary functions for goodness of fit assessment by 'sienaGOF'

## -- C --

coCovar | Function to create a constant covariate object
coDyadCovar | Function to create a constant dyadic covariate object.

## -- D --

descriptives.sienaGOF | Functions to assess goodness of fit for SAOMs
dyadicCov | Auxiliary functions for goodness of fit assessment by 'sienaGOF'

## -- E --

edit.sienaEffects | Allow editing of a sienaEffects object if a gui is available.
effectsDocumentation | Function to create a table of documentation of effect names, short names etc.
entropy | Functions to assess the relative importance of effects at observation moments

## -- F --

funnelPlot | Plot function for a list of sienaFit objects

## -- G --

getEffects | Function to create a Siena effects object

## -- H --

HN3401 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
hn3401 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
HN3403 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
HN3404 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
HN3406 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.

## -- I --

includeEffects | Function to include effects in a Siena model
includeGMoMStatistics | Function to include GMoM statistics in a Siena model
includeInteraction | Function to create user-specified interactions for a Siena model.
includeTimeDummy | Function to include time dummy effects in a Siena model
IndegreeDistribution | Auxiliary functions for goodness of fit assessment by 'sienaGOF'
initializeFRAN | Versions of FRAN
iwlsm | Function to fit an iterated weighted least squares model.
iwlsm.default | Function to fit an iterated weighted least squares model.
iwlsm.formula | Function to fit an iterated weighted least squares model.

## -- M --

maxlikec | Versions of FRAN
maxlikefn | A ML version of FRAN
meta.table | Methods for processing sienaMeta objects
mixedTriadCensus | Auxiliary functions for goodness of fit assessment by 'sienaGOF'
model.create | Function to create an object containing the algorithm specifications for parameter estimation in RSiena
Multipar.RSiena | Wald and score tests for RSiena results

## -- N --

N3401 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
n3401 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
N3403 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
N3404 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
N3406 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
networkExtraction | Auxiliary functions for goodness of fit assessment by 'sienaGOF'

## -- O --

OutdegreeDistribution | Auxiliary functions for goodness of fit assessment by 'sienaGOF'

## -- P --

plot.sienaGOF | Functions to assess goodness of fit for SAOMs
plot.sienaMeta | Methods for processing sienaMeta objects
plot.sienaRI | Functions to assess the relative importance of effects at observation moments
plot.sienaTimeTest | Functions to plot assessment of time heterogeneity of parameters
predict.iwlsm | Function to fit an iterated weighted least squares model.
print.iwlsm | Function to fit an iterated weighted least squares model.
print.sienaEffects | Print methods for Siena effects objects
print.sienaFit | Methods for processing sienaFit objects, produced by 'siena07'.
print.sienaMeta | Methods for processing sienaMeta objects
print.sienaRI | Functions to assess the relative importance of effects at observation moments
print.sienaTest | Print method for Wald and score tests for RSiena results
print.summary.iwlsm | Summary method for Iterative Weighted Least Squares Models
print.summary.sienaEffects | Print methods for Siena effects objects
print.summary.sienaFit | Methods for processing sienaFit objects, produced by 'siena07'.
print.summary.sienaMeta | Methods for processing sienaMeta objects
print.xtable.sienaFit | Methods for processing sienaFit objects, produced by 'siena07'.
print01Report | Function to produce the Siena01 report from R objects
psi.iwlsm | Function to fit an iterated weighted least squares model.

## -- R --

RSiena | Simulation Investigation for Empirical Network Analysis

## -- S --

s50 | Network data: excerpt from "Teenage Friends and Lifestyle Study" data.
s501 | Network 1 data: excerpt from "Teenage Friends and Lifestyle Study" data.
s502 | Network 2 data: excerpt from "Teenage Friends and Lifestyle Study" data.
s503 | Network 3 data: excerpt from "Teenage Friends and Lifestyle Study" data.
s50a | Alcohol use data: excerpt from "Teenage Friends and Lifestyle Study" data
s50s | Smoking data: excerpt from "Teenage Friends and Lifestyle Study" data
score.Test | Wald and score tests for RSiena results
scoreTest | Wald and score tests for RSiena results
setEffect | Function to set various columns in an effects object in a Siena model.
siena | Function to create a Siena data object
siena.table | Methods for processing sienaFit objects, produced by 'siena07'.
siena07 | Function to estimate parameters in a Siena model
siena08 | Function to perform a meta analysis of a collection of Siena fits.
sienaAlgorithm | Function to create an object containing the algorithm specifications for parameter estimation in RSiena
sienaAlgorithmCreate | Function to create an object containing the algorithm specifications for parameter estimation in RSiena
sienaCompositionChange | Functions to create a Siena composition change object
sienaCompositionChangeFromFile | Functions to create a Siena composition change object
sienaDataConstraint | Function to change the values of the constraints between networks.
sienaDataCreate | Function to create a Siena data object
sienaDependent | Function to create a dependent variable for a Siena model
sienaEffects | Function to create a Siena effects object
sienaFit | Methods for processing sienaFit objects, produced by 'siena07'.
sienaFit.methods | Methods for processing sienaFit objects, produced by 'siena07'.
sienaGOF | Functions to assess goodness of fit for SAOMs
sienaGOF-auxiliary | Auxiliary functions for goodness of fit assessment by 'sienaGOF'
sienaGroup | Function to group together several Siena data objects
sienaGroupCreate | Function to group together several Siena data objects
sienaGroupEffects | Function to create a Siena effects object
sienaMeta | Function to perform a meta analysis of a collection of Siena fits.
sienaModel | Function to create an object containing the algorithm specifications for parameter estimation in RSiena
sienaModelCreate | Function to create an object containing the algorithm specifications for parameter estimation in RSiena
sienaNet | Function to create a dependent variable for a Siena model
sienaNodeSet | Function to create a node set
sienaRI | Functions to assess the relative importance of effects at observation moments
sienaRI.methods | Functions to assess the relative importance of effects at observation moments
sienaTest | Wald and score tests for RSiena results
sienaTest.methods | Print method for Wald and score tests for RSiena results
sienaTimeTest | Functions to assess and account for time heterogeneity of parameters
simstats0c | Versions of FRAN
sparseMatrixExtraction | Auxiliary functions for goodness of fit assessment by 'sienaGOF'
summary.iwlsm | Summary method for Iterative Weighted Least Squares Models
summary.sienaEffects | Print methods for Siena effects objects
summary.sienaFit | Methods for processing sienaFit objects, produced by 'siena07'.
summary.sienaMeta | Methods for processing sienaMeta objects

## -- T --

terminateFRAN | Versions of FRAN
testSame.RSiena | Wald and score tests for RSiena results
tmp3 | van de Bunt's Freshman dataset, time point 3
tmp4 | van de Bunt's Freshman dataset, time point 4
TriadCensus | Auxiliary functions for goodness of fit assessment by 'sienaGOF'

## -- U --

updateSpecification | A function to update the initial values of theta, and a function to update an effects object.
updateTheta | A function to update the initial values of theta, and a function to update an effects object.

## -- V --

varCovar | Function to create a changing covariate object.
varDyadCovar | Function to create a changing dyadic covariate object.

## -- W --

Wald.RSiena | Wald and score tests for RSiena results

## -- X --

xtable | Access xtable in package xtable
xtable.sienaFit | Methods for processing sienaFit objects, produced by 'siena07'.