%+%	grapes-plus-grapes
alignmentCheck	alignmentCheck
appendEnv	appendEnv
assembleMZQC	assembleMZQC
assignBlocks	assignBlocks
boxplotCompare	boxplotCompare
brewer.pal.Safe	brewer.pal.Safe
byX	byX
byXflex	byXflex
checkEnglishLocale	checkEnglishLocale
computeMatchRTFractions	computeMatchRTFractions
correctSetSize	correctSetSize
createReport	createReport
createYaml	createYaml
CV	CV
CVDictionarySingleton	CVDictionarySingleton
darken	darken
del0	del0
delLCP	delLCP
delLCS	delLCS
FilenameMapper	FilenameMapper-class
FilenameMapper-class	FilenameMapper-class
findAlignReference	findAlignReference
fixCalibration	fixCalibration
flattenList	flattenList
fromDatatoMzQC	fromDatatoMzQC
getAbundanceClass	getAbundanceClass
getCVDictionary	getCVDictionary
getCVTemplate	getCVTemplate
getECDF	getECDF
getFragmentErrors	getFragmentErrors
getHTMLTable	getHTMLTable
getMaxima	getMaxima
getMetaData	getMetaData
getMetricsObjects	getMetricsObjects
getMQPARValue	getMQPARValue
getPCA	getPCA
getPeptideCounts	getPeptideCounts
getProteinCounts	getProteinCounts
getQCHeatMap	getQCHeatMap
getQualityMetricTemplate	getQualityMetricTemplate
getReportFilenames	getReportFilenames
getRunQualityTemplate	getRunQualityTemplate
ggAxisLabels	ggAxisLabels
ggText	ggText
grepv	grepv
hasFileSuffix	hasFileSuffix
idTransferCheck	idTransferCheck
inMatchWindow	inMatchWindow
isUndefined	isUndefined
isValidMzQC	isValidMzQC
lcpCount	lcpCount
LCS	LCS
lcsCount	lcsCount
LCSn	LCSn
longestCommonPrefix	longestCommonPrefix
longestCommonSuffix	longestCommonSuffix
mosaicize	mosaicize
MQDataReader	MQDataReader-class
MQDataReader-class	MQDataReader-class
MzQCanalysisSoftware	MzQCanalysisSoftware-class
MzQCanalysisSoftware-class	MzQCanalysisSoftware-class
MzQCbaseQuality	MzQCbaseQuality-class
MzQCbaseQuality-class	MzQCbaseQuality-class
MzQCcontrolledVocabulary	MzQCcontrolledVocabulary-class
MzQCcontrolledVocabulary-class	MzQCcontrolledVocabulary-class
MzQCcvParameter	MzQCcvParameter-class
MzQCcvParameter-class	MzQCcvParameter-class
MzQCDateTime	MzQCDateTime-class
MzQCDateTime-class	MzQCDateTime-class
MzQCinputFile	MzQCinputFile-class
MzQCinputFile-class	MzQCinputFile-class
MzQCmetadata	MzQCmetadata-class
MzQCmetadata-class	MzQCmetadata-class
MzQCmzQC	MzQCmzQC-class
MzQCmzQC-class	MzQCmzQC-class
MzQCqualityMetric	MzQCqualityMetric-class
MzQCqualityMetric-class	MzQCqualityMetric-class
MzTabReader	MzTabReader-class
MzTabReader-class	MzTabReader-class
NULL_to_charNA	NULL_to_charNA
NULL_to_NA	NULL_to_NA
parseOBO	parseOBO
pasten	pasten
pastet	pastet
peakSegmentation	peakSegmentation
peakWidthOverTime	peakWidthOverTime
plotTable	plotTable
plotTableRaw	plotTableRaw
plot_CalibratedMSErr	plot_CalibratedMSErr
plot_Charge	plot_Charge
plot_ContEVD	plot_ContEVD
plot_ContsPG	plot_ContsPG
plot_ContUser	plot_ContUser
plot_ContUserScore	plot_ContUserScore
plot_CountData	plot_CountData
plot_IDRate	plot_IDRate
plot_IDsOverRT	plot_IDsOverRT
plot_IonInjectionTimeOverRT	plot_IonInjectionTimeOverRT
plot_MBRAlign	plot_MBRAlign
plot_MBRgain	plot_MBRgain
plot_MBRIDtransfer	plot_MBRIDtransfer
plot_MissedCleavages	plot_MissedCleavages
plot_MS2Decal	plot_MS2Decal
plot_MS2Oversampling	plot_MS2Oversampling
plot_RatiosPG	plot_RatiosPG
plot_RTPeakWidth	plot_RTPeakWidth
plot_ScanIDRate	plot_ScanIDRate
plot_TIC	plot_TIC
plot_TopN	plot_TopN
plot_TopNoverRT	plot_TopNoverRT
plot_UncalibratedMSErr	plot_UncalibratedMSErr
pointsPutX	pointsPutX
print.PTXQC_table	print.PTXQC_table
printWithFooter	printWithFooter
PTXQC	PTXQC
QCMetaFilenames	QCMetaFilenames
qcMetric	qcMetric-class
qcMetric-class	qcMetric-class
qcMetric_MSMSScans_TopNoverRT	qcMetric_MSMSScans_TopNoverRT-class
qcMetric_MSMSScans_TopNoverRT-class	qcMetric_MSMSScans_TopNoverRT-class
qualBestKS	qualBestKS
qualCentered	qualCentered
qualCenteredRef	qualCenteredRef
qualGaussDev	qualGaussDev
qualHighest	qualHighest
qualLinThresh	qualLinThresh
qualMedianDist	qualMedianDist
qualUniform	qualUniform
read.MQ	read.MQ
removeSuffix	removeSuffix
renameFile	renameFile
repEach	repEach
RSD	RSD
RTalignmentTree	RTalignmentTree
scale01linear	scale01linear
scale_x_discrete_reverse	scale_x_discrete_reverse
scale_y_discrete_reverse	scale_y_discrete_reverse
ScoreInAlignWindow	ScoreInAlignWindow
shortenStrings	shortenStrings
simplifyNames	simplifyNames
suffixToCV	suffixToCV
supCount	supCount
theme_blank	theme_blank
thinOut	thinOut
thinOutBatch	thinOutBatch
wait_for_writable	wait_for_writable
writeMZQC	writeMZQC
YAMLClass	YAMLClass-class
YAMLClass-class	YAMLClass-class
