Package: OlinkAnalyze
Type: Package
Title: Facilitate Analysis of Proteomic Data from Olink
Description: A collection of functions to facilitate analysis of proteomic data
    from Olink, primarily NPX data that has been exported from Olink NPX 
    Manager or MyData. The functions also work on QUANT data from Olink by log-
    transforming the QUANT data. The functions are focused on reading data,
    facilitating data wrangling and quality control analysis, performing
    statistical analysis and generating figures to visualize the results of
    the statistical analysis. The goal of this package is to help users extract
    biological insights from proteomic data run on the Olink platform.
Version: 3.0.0
Authors@R: 
    c(person(given = "Kathleen",
            family = "Nevola",
            email = "biostattools@olink.com",
            role = c("aut","cre"), 
            comment = c(ORCID = "0000-0002-5183-6444", Github = "kathy-nevola")),
      person(given = "Marianne",
            family = "Sandin",
            role = "aut",
            comment = c(ORCID = "0000-0001-6186-963X",Github = "marisand")),
      person(given = "Jamey",
             family = "Guess",
             role = "aut",
             comment = c(ORCID = "0000-0002-4017-0923", Github = "jrguess")),
      person(given = "Simon",
             family = "Forsberg",
             role = "aut",
             comment = c(ORCID = "0000-0002-7451-9222", Github = "simfor")),
      person(given = "Christoffer",
             family = "Cambronero",
             role = "aut",
             comment = c(Github = "Orbmac")),
      person(given = "Pascal",
             family = "Pucholt",
             role = "aut",
             comment = c(ORCID = "0000-0003-3342-1373", Github = "AskPascal")),
      person(given = "Boxi", 
             family = "Zhang",
             role = "ctb",
             comment = c(ORCID = "0000-0001-7758-6204", Github = "boxizhang")),
      person(given = "Per",
             family = "Eriksson",
             role = "ctb",
             comment = c(ORCID = "0000-0001-7633-403X", Github = "b_watcher")),
      person(given = "Klev",
             family = "Diamanti",
             role = "ctb",
             comment = c(ORCID = "0000-0002-4922-8415", Github = "klevdiamanti")),
      person(given = "Emmett",
             family = "Sprecher",
             role = "ctb",
             comment = c(ORCID = "0000-0002-7710-695X")),
      person(given = "Jessica",
             family = "Barbagallo",
             role = "ctb",
             comment = c(Github = "jbarbagallo")),
      person(given = "Olof",
             family = "Mansson",
             role = "ctr",
             comment = c(Github = "olofmansson")),
      person(given = "Ola",
             family = "Caster",
             role = "ctb",
             comment = c(Github = "OlaCaster")),
      person(given = "Olink",
             role = c("cph", "fnd")))
Depends: R (>= 3.6.0)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
Suggests: extrafont, knitr, rmarkdown, testthat (>= 3.0.0), scales,
        markdown, vdiffr
License: GPL-3
VignetteBuilder: knitr
Imports: car, broom, dplyr, emmeans, forcats, generics, ggplot2,
        ggpubr, ggrepel, grDevices, grid, lme4, lmerTest, magrittr,
        methods, readxl, rlang, stats, stringr, tibble, tidyr,
        tidyselect, tools, utils
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2022-02-09 17:15:14 UTC; kathy.nevola
Author: Kathleen Nevola [aut, cre] (<https://orcid.org/0000-0002-5183-6444>,
    kathy-nevola),
  Marianne Sandin [aut] (<https://orcid.org/0000-0001-6186-963X>,
    marisand),
  Jamey Guess [aut] (<https://orcid.org/0000-0002-4017-0923>, jrguess),
  Simon Forsberg [aut] (<https://orcid.org/0000-0002-7451-9222>, simfor),
  Christoffer Cambronero [aut] (Orbmac),
  Pascal Pucholt [aut] (<https://orcid.org/0000-0003-3342-1373>,
    AskPascal),
  Boxi Zhang [ctb] (<https://orcid.org/0000-0001-7758-6204>, boxizhang),
  Per Eriksson [ctb] (<https://orcid.org/0000-0001-7633-403X>, b_watcher),
  Klev Diamanti [ctb] (<https://orcid.org/0000-0002-4922-8415>,
    klevdiamanti),
  Emmett Sprecher [ctb] (<https://orcid.org/0000-0002-7710-695X>),
  Jessica Barbagallo [ctb] (jbarbagallo),
  Olof Mansson [ctr] (olofmansson),
  Ola Caster [ctb] (OlaCaster),
  Olink [cph, fnd]
Maintainer: Kathleen Nevola <biostattools@olink.com>
Repository: CRAN
Date/Publication: 2022-02-10 19:20:05 UTC
Built: R 4.0.5; ; 2022-04-21 16:09:29 UTC; windows
