MXM-package	MXM-package
acc.mxm	cv.ses
acc_multinom.mxm	cv.ses
apply_ideq	MXM-internal
apply_ideq.glmm	MXM-internal
apply_ideq.ma	MXM-internal
auc	auc
auc.mxm	cv.ses
bbc	bbc
beta.bsreg	MXM-internal
beta.fsreg	MXM-internal
beta.fsreg_2	MXM-internal
beta.mod	beta.mod
beta.mxm	cv.ses
beta.reg	MXM-internal
beta.regs	beta.regs
betamle.wei	MXM-internal
bic.betafsreg	MXM-internal
bic.clogit.fsreg	MXM-internal
bic.fsreg	bic.fsreg
bic.gammafsreg	bic.glm.fsreg
bic.glm.fsreg	bic.glm.fsreg
bic.llr.fsreg	MXM-internal
bic.mm.fsreg	bic.glm.fsreg
bic.normlog.fsreg	bic.glm.fsreg
bic.tobit.fsreg	MXM-internal
bic.wr.fsreg	MXM-internal
bic.zipfsreg	MXM-internal
big.bs.g2	MXM-internal
big.fbed.g2	MXM-internal
big.fbed.reg	big.fbed.reg
big.gomp	big.gomp
big.gomp.path	big.gomp
big.model	MXM-internal
big.score.univregs	univregs
bn.skel.utils	bn.skel.utils
bn.skel.utils2	bn.skel.utils
boot.gomp	gomp
bs.g2	MXM-internal
bs.reg	bs.reg
bsreg.big	MXM-internal
cat.ci	condi
cat_condis	MXM-internal
censIndCR	censIndCR
censIndER	censIndCR
censIndLLR	censIndCR
censIndWR	censIndCR
certificate.of.exclusion	certificate.of.exclusion
certificate.of.exclusion2	certificate.of.exclusion
ci.fast	ci.mm
ci.fast2	ci.mm
ci.mm	ci.mm
ci.mm2	ci.mm
ci.mxm	cv.ses
ciwr.mxm	cv.ses
clogit.fsreg	MXM-internal
clogit.fsreg_2	MXM-internal
clogit.mxm	cv.ses
comb_condis	MXM-internal
compare_p_values	MXM-internal
cond.regs	cond.regs
condi	condi
condi.perm	MXM-internal
CondIndTests	MXMCondIndTests
condis	condis
conf.edge.lower	conf.edge.lower
cor.drop1	cor.drop1
corfbed.network	corfs.network
corfs.network	corfs.network
corgraph	corgraph
coxph.mxm	cv.ses
cv.fbed.lmm.reg	cv.fbed.lmm.reg
cv.gomp	cv.gomp
cv.mmpc	cv.ses
cv.permmmpc	cv.ses
cv.permses	cv.ses
cv.ses	cv.ses
cv.waldmmpc	cv.ses
cv.waldses	cv.ses
cvlogit.cv.ses	MXM-internal
cvmmpc.par	MXM-internal
cvpermmmpc.par	MXM-internal
cvpermses.par	MXM-internal
cvses.par	MXM-internal
cvwaldmmpc.par	MXM-internal
cvwaldses.par	MXM-internal
dag2eg	dag2eg
dag_to_eg	MXM-internal
disctor_condis	MXM-internal
dist.condi	condi
ebic.beta.bsreg	MXM-internal
ebic.bsreg	ebic.bsreg
ebic.cr.bsreg	MXM-internal
ebic.fbed.beta	MXM-internal
ebic.fbed.cr	MXM-internal
ebic.fbed.glm	MXM-internal
ebic.fbed.glmm	MXM-internal
ebic.fbed.glmm.cr	MXM-internal
ebic.fbed.glmm.ordinal	MXM-internal
ebic.fbed.glmm.ordinal.reps	MXM-internal
ebic.fbed.glmm.reps	MXM-internal
ebic.fbed.lm	MXM-internal
ebic.fbed.lmm	MXM-internal
ebic.fbed.lmm.reps	MXM-internal
ebic.fbed.mmreg	MXM-internal
ebic.fbed.multinom	MXM-internal
ebic.fbed.nb	MXM-internal
ebic.fbed.ordinal	MXM-internal
ebic.fbed.tobit	MXM-internal
ebic.fbed.wr	MXM-internal
ebic.fbed.zip	MXM-internal
ebic.glm.bsreg	MXM-internal
ebic.glmm.bsreg	ebic.glmm.bsreg
ebic.glmm.cr.bsreg	MXM-internal
ebic.glmm.ordinal.reps.bsreg	MXM-internal
ebic.glmm.reps.bsreg	MXM-internal
ebic.llr.bsreg	MXM-internal
ebic.lm.bsreg	MXM-internal
ebic.mm.bsreg	MXM-internal
ebic.model	MXM-internal
ebic.multinom.bsreg	MXM-internal
ebic.ordinal.bsreg	MXM-internal
ebic.regs	ebic.regs
ebic.spml.bsreg	MXM-internal
ebic.tobit.bsreg	MXM-internal
ebic.univregs	univregs
ebic.wr.bsreg	MXM-internal
ebic.zip.bsreg	MXM-internal
ebicScore	MXM-internal
equivdags	equivdags
euclid_sens.spec.mxm	cv.ses
exporeg.mxm	cv.ses
fbed.ebic	MXM-internal
fbed.g2	MXM-internal
fbed.gee.reg	fbed.gee.reg
fbed.geeglm	MXM-internal
fbed.geeglm.reps	MXM-internal
fbed.geelm	MXM-internal
fbed.geelm.reps	MXM-internal
fbed.glmm	MXM-internal
fbed.glmm.cr	MXM-internal
fbed.glmm.nb	MXM-internal
fbed.glmm.nb.reps	MXM-internal
fbed.glmm.ordinal	MXM-internal
fbed.glmm.ordinal.reps	MXM-internal
fbed.glmm.reg	fbed.glmm.reg
fbed.glmm.reps	MXM-internal
fbed.lmm	MXM-internal
fbed.lmm.reps	MXM-internal
fbed.lr	MXM-internal
fbed.ordgee	MXM-internal
fbed.ordgee.reps	MXM-internal
fbed.reg	fbed.reg
fbedreg.bic	fbedreg.bic
findAncestors	findDescendants
findDescendants	findDescendants
fs.reg	fs.reg
fs.reg_2	MXM-internal
fscore.mxm	cv.ses
gammafsreg	glm.fsreg
gammafsreg_2	MXM-internal
gee.ci.mm	glmm.ci.mm
gee.condregs	cond.regs
gee.mmhc.skel	mmhc.skel
gee.pc.skel	pc.skel
gee.univregs	univregs
generatefolds	generatefolds
glm.bsreg	glm.bsreg
glm.bsreg2	glm.bsreg
glm.fsreg	glm.fsreg
glm.fsreg_2	MXM-internal
glm.mxm	cv.ses
glmm.bsreg	glmm.bsreg
glmm.ci.mm	glmm.ci.mm
glmm.condregs	cond.regs
glmm.cr.bsreg	MXM-internal
glmm.mmhc.skel	mmhc.skel
glmm.nb.bsreg	MXM-internal
glmm.nb.reps.bsreg	MXM-internal
glmm.ordinal.bsreg	MXM-internal
glmm.ordinal.reps.bsreg	MXM-internal
glmm.pc.skel	pc.skel
glmm.univregs	univregs
gomp	gomp
gomp.path	gomp
gomp2	MXM-internal
group.mvbetas	group.mvbetas
gSquare	gSquare
iamb	iamb
iamb.betabs	MXM-internal
iamb.bs	iamb.bs
iamb.gammabs	MXM-internal
iamb.glmbs	MXM-internal
iamb.normlogbs	MXM-internal
iamb.tobitbs	MXM-internal
iamb.zipbs	MXM-internal
ida	ida
IdentifyEquivalence	MXM-internal
IdentifyEquivalence.gee	MXM-internal
IdentifyEquivalence.glmm	MXM-internal
IdentifyEquivalence.ma	MXM-internal
identifyTheEquivalent	MXM-internal
identifyTheEquivalent.gee	MXM-internal
identifyTheEquivalent.glmm	MXM-internal
identifyTheEquivalent.ma	MXM-internal
internaliamb.betabs	MXM-internal
internaliamb.binombs	MXM-internal
internaliamb.gammabs	MXM-internal
internaliamb.lmbs	MXM-internal
internaliamb.mmbs	MXM-internal
internaliamb.normlogbs	MXM-internal
internaliamb.poisbs	MXM-internal
internaliamb.tobitbs	MXM-internal
internaliamb.zipbs	MXM-internal
Internalmammpc	MXM-internal
Internalmases	MXM-internal
InternalMMPC	MXM-internal
InternalMMPC.gee	MXM-internal
InternalMMPC.glmm	MXM-internal
InternalMMPC.timeclass	MXM-internal
InternalSES	MXM-internal
InternalSES.gee	MXM-internal
InternalSES.glmm	MXM-internal
is.dag	is.dag
is.sepset	MXM-internal
kfbed.gee.reg	MXM-internal
kfbed.glmm.reg	MXM-internal
kfbed.reg	MXM-internal
llr.bsreg	MXM-internal
llrreg.mxm	cv.ses
lm.fsreg	lm.fsreg
lm.fsreg_2	MXM-internal
lm.mxm	cv.ses
lmm.bsreg	MXM-internal
lmrob.mxm	cv.ses
local.mmhc.skel	local.mmhc.skel
logiquant.regs	logiquant.regs
ma.mmpc	ma.ses
ma.ses	ma.ses
mae.mxm	cv.ses
mammpc.output	mammpc.output-class
mammpc.output-class	mammpc.output-class
mammpc.output-method	mammpc.output-class
mases.output	mases.output-class
mases.output-class	mases.output-class
mases.output-method	mases.output-class
max_min_assoc	MXM-internal
max_min_assoc.gee	MXM-internal
max_min_assoc.glmm	MXM-internal
max_min_assoc.ma	MXM-internal
mb	mb
mci.mxm	cv.ses
min_assoc	MXM-internal
min_assoc.gee	MXM-internal
min_assoc.glmm	MXM-internal
min_assoc.ma	MXM-internal
mmhc.skel	mmhc.skel
mmmb	mmmb
MMPC	SES
MMPC.gee	SES.glmm
mmpc.gee.model	mmpc.glmm.model
MMPC.gee.output	MMPC.gee.output-class
MMPC.gee.output-class	MMPC.gee.output-class
MMPC.gee.output-method	MMPC.gee.output-class
mmpc.gee2	mmpc.glmm2
MMPC.glmm	SES.glmm
mmpc.glmm.model	mmpc.glmm.model
MMPC.glmm.output	MMPC.glmm.output-class
MMPC.glmm.output-class	MMPC.glmm.output-class
MMPC.glmm.output-method	MMPC.glmm.output-class
mmpc.glmm2	mmpc.glmm2
mmpc.model	ses.model
mmpc.or	mmpc.or
mmpc.path	mmpc.path
MMPC.timeclass	SES.timeclass
mmpc.timeclass.model	mmpc.timeclass.model
mmpc2	mmpc2
mmpcbackphase	mmpcbackphase
MMPCoutput	MMPCoutput-class
MMPCoutput-class	MMPCoutput-class
MMPCoutput-method	MMPCoutput-class
modeler	modeler
mse.mxm	cv.ses
multinom.mxm	cv.ses
nb.mxm	cv.ses
nbdev.mxm	cv.ses
nchoosek	MXM-internal
nei	nei
Ness	Ness
normlog.fsreg	glm.fsreg
ord.resid	ord.resid
ordinal.mxm	cv.ses
ordinal.reg	ordinal.reg
ord_mae.mxm	cv.ses
partialcor	partialcor
pc.con	pc.skel
pc.or	pc.or
pc.sel	pc.sel
pc.skel	pc.skel
pc.skel.boot	pc.skel
pearson_condis	MXM-internal
pearson_condis.rob	MXM-internal
perm.apply_ideq	MXM-internal
perm.betaregs	beta.regs
perm.IdentifyEquivalence	MXM-internal
perm.identifyTheEquivalent	MXM-internal
perm.Internalmmpc	MXM-internal
perm.mmpc	SES
perm.mmpc.path	mmpc.path
perm.ses	SES
perm.univariateScore	MXM-internal
perm.univregs	univregs
perm.zipregs	zip.regs
permBeta	testIndBeta
permBinom	testIndBinom
permClogit	testIndClogit
permcor	permcor
permcorrels	permcor
permCR	censIndCR
permDcor	testIndFisher
permER	censIndCR
permFisher	testIndFisher
permGamma	testIndGamma
permgSquare	gSquare
permIGreg	testIndGamma
permLLR	censIndCR
permLogistic	testIndLogistic
permMMFisher	testIndFisher
permMMReg	testIndReg
permMultinom	testIndLogistic
permMVreg	testIndReg
permNB	testIndPois
permNormLog	testIndGamma
permOrdinal	testIndLogistic
permPois	testIndPois
permReg	testIndReg
permRQ	testIndReg
permTobit	testIndTobit
permWR	censIndCR
permZIP	testIndPois
pi0est	pi0est
plot,mammpc.output,ANY-method	mammpc.output-class
plot,mammpc.output-method	mammpc.output-class
plot,mases.output,ANY-method	mases.output-class
plot,mases.output-method	mases.output-class
plot,MMPC.gee.output,ANY-method	MMPC.gee.output-class
plot,MMPC.gee.output-method	MMPC.gee.output-class
plot,MMPC.glmm.output,ANY-method	MMPC.glmm.output-class
plot,MMPC.glmm.output-method	MMPC.glmm.output-class
plot,MMPCoutput,ANY-method	MMPCoutput-class
plot,MMPCoutput-method	MMPCoutput-class
plot,SES.gee.output,ANY-method	SES.gee.output-class
plot,SES.gee.output-method	SES.gee.output-class
plot,SES.glmm.output,ANY-method	SES.glmm.output-class
plot,SES.glmm.output-method	SES.glmm.output-class
plot,SESoutput,ANY-method	SESoutput-class
plot,SESoutput-method	SESoutput-class
plotnetwork	plotnetwork
pois.mxm	cv.ses
poisdev.mxm	cv.ses
proc_time-class	MXM-internal
pval.mixbeta	pval.mixbeta
pve.mxm	cv.ses
quasibinom.fsreg	MXM-internal
quasibinom.fsreg_2	MXM-internal
quasipois.fsreg	MXM-internal
quasipois.fsreg_2	MXM-internal
R0	MXM-internal
R1	MXM-internal
R2	MXM-internal
R3	MXM-internal
rdag	rdag
rdag2	rdag
read.big.data	read.big.data
reg.fit	reg.fit
regbeta	MXM-internal
regbetawei	MXM-internal
regzinb	MXM-internal
regzip	MXM-internal
regzipwei	MXM-internal
ridge.plot	ridge.plot
ridge.reg	ridge.reg
ridgereg.cv	ridgereg.cv
rint.regs	univregs
rmdag	rdag
rq.mxm	cv.ses
score.univregs	univregs
SES	SES
SES.gee	SES.glmm
ses.gee.model	mmpc.glmm.model
SES.gee.output	SES.gee.output-class
SES.gee.output-class	SES.gee.output-class
SES.gee.output-method	SES.gee.output-class
SES.glmm	SES.glmm
ses.glmm.model	mmpc.glmm.model
SES.glmm.output	SES.glmm.output-class
SES.glmm.output-class	SES.glmm.output-class
SES.glmm.output-method	SES.glmm.output-class
ses.model	ses.model
SES.timeclass	SES.timeclass
ses.timeclass.model	mmpc.timeclass.model
SESoutput	SESoutput-class
SESoutput-class	SESoutput-class
SESoutput-method	SESoutput-class
shd	shd
sp.logiregs	sp.logiregs
spml.bsreg	MXM-internal
supervised.pca	supervised.pca
tc.plot	tc.plot
test.maker	MXM-internal
testIndBeta	testIndBeta
testIndBinom	testIndBinom
testIndClogit	testIndClogit
testIndFisher	testIndFisher
testIndGamma	testIndGamma
testIndGEEGamma	testIndGEEReg
testIndGEELogistic	testIndGEEReg
testIndGEENormLog	testIndGEEReg
testIndGEEPois	testIndGEEReg
testIndGEEReg	testIndGEEReg
testIndGLMMCR	testIndGLMMReg
testIndGLMMGamma	testIndGLMMReg
testIndGLMMLogistic	testIndGLMMReg
testIndGLMMNB	testIndGLMMReg
testIndGLMMNormLog	testIndGLMMReg
testIndGLMMOrdinal	testIndGLMMReg
testIndGLMMPois	testIndGLMMReg
testIndGLMMReg	testIndGLMMReg
testIndIGreg	testIndGamma
testIndLMM	testIndGLMMReg
testIndLogistic	testIndLogistic
testIndMMFisher	testIndFisher
testIndMMReg	testIndReg
testIndMultinom	testIndLogistic
testIndMVreg	testIndReg
testIndNB	testIndPois
testIndNormLog	testIndGamma
testIndOrdinal	testIndLogistic
testIndPois	testIndPois
testIndQBinom	testIndLogistic
testIndQPois	testIndPois
testIndReg	testIndReg
testIndRQ	testIndReg
testIndSpearman	testIndFisher
testIndSPML	testIndSPML
testIndTimeLogistic	testIndTimeLogistic
testIndTimeMultinom	testIndTimeLogistic
testIndTobit	testIndTobit
testIndZIP	testIndPois
topological_sort	topological_sort
transitiveClosure	transitiveClosure
triangles.search	triangles.search
undir.path	undir.path
univariateScore	MXM-internal
univariateScore.gee	MXM-internal
univariateScore.glmm	MXM-internal
univariateScore.ma	MXM-internal
univariateScore.timeclass	MXM-internal
univregs	univregs
wald.betaregs	beta.regs
wald.Internalmmpc	MXM-internal
wald.Internalses	MXM-internal
wald.logisticregs	wald.logisticregs
wald.mmpc	SES
wald.mmpc.path	mmpc.path
wald.poissonregs	wald.logisticregs
wald.ses	SES
wald.univariateScore	MXM-internal
wald.univregs	univregs
wald.zipregs	zip.regs
waldBeta	testIndBeta
waldBinom	testIndBinom
waldCR	censIndCR
waldER	censIndCR
waldGamma	testIndGamma
waldIGreg	testIndGamma
waldLLR	censIndCR
waldLogistic	testIndLogistic
waldmmpc.model	ses.model
waldMMReg	testIndReg
waldNB	testIndPois
waldNormLog	testIndGamma
waldOrdinal	testIndLogistic
waldPois	testIndPois
waldQBinom	testIndLogistic
waldses.model	ses.model
waldTobit	testIndTobit
waldWR	censIndCR
waldZIP	testIndPois
weibreg.mxm	cv.ses
wr.fsreg	MXM-internal
wr.fsreg_2	MXM-internal
zinb.mle	MXM-internal
zinb.mod	zip.mod
zinb.reg	zip.mod
zip.bsreg	MXM-internal
zip.fsreg	MXM-internal
zip.fsreg_2	MXM-internal
zip.mod	zip.mod
zip.reg	zip.mod
zip.regs	zip.regs
zipmle.wei	MXM-internal
zipwei	MXM-internal
