compute_exome_coverage	compute_exome_coverage
createOncoMatrix	createOncoMatrix
detectMAFGenome	detectMAFGenome
filterMAF	filterMAF
filter_maf_chunked	filter_maf_chunked
generateBurdenPlot	generateBurdenPlot
generateMutationTypePlot	generateMutationTypePlot
generateOncoPlot	generateOncoPlot
generateOverlapPlot	generateOverlapPlot
generateRibbonPlot	generateRibbonPlot
generateTCGAComparePlot	generateTCGAComparePlot
generateTiTvPlot	generateTiTvPlot
generateVariantTable	generateVariantTable
getMAFDashboard	getMAFDashboard
getMAFdataTCGA	getMAFdataTCGA
getTCGAClinicalAnnotation	getTCGAClinicalAnnotation
getTCGAClinicalColors	getTCGAClinicalColors
