Package: EpiNow2
Type: Package
Title: Estimate Real-Time Case Counts and Time-Varying Epidemiological
        Parameters
Version: 1.3.2
Authors@R: c(
    person(given = "Sam", "Abbott",
           role = c("aut", "cre"),
           email = "sam.abbott@lshtm.ac.uk",
           comment = c(ORCID = "0000-0001-8057-8037")),
    person("Joel", "Hellewell",
           email = "joel.hellewell@lshtm.ac.uk", 
           role = c("aut"),
           comment = c(ORCID = "0000-0003-2683-0849")),
    person("Katharine", "Sherratt",
           email = "katharine.sherratt@lshtm.ac.uk",
           role = c("aut")),
    person("Katelyn", "Gostic",
           email = "kgostic@uchicago.edu",
           role = c("aut")),
    person("Joe", "Hickson",
           email = "joseph.hickson@metoffice.gov.uk",
           role = c("aut")),  
    person("Hamada S.", "Badr",
           email = "badr@jhu.edu",
           role = c("aut"),
           comment = c(ORCID = "0000-0002-9808-2344")),
    person("Michael", "DeWitt",
           email = "me.dewitt.jr@gmail.com",
           role = c("aut"),
           comment = c(ORCID = "0000-0001-8940-1967")),
    person("Robin", "Thompson", 
           email = "robin.thompson@lshtm.ac.uk", 
           role = c("aut")), 
    person("Sophie", "Meakin", 
           email = "sophie.meaking@lshtm.ac.uk", 
           role = c("ctb")), 
    person("James", "Munday",
           email = "james.munday@lshtm.ac.uk",
           role = c("ctb")),
    person("Nikos", "Bosse", 
           role = c("ctb")),
    person("Paul", "Mee",
           email = "paul.mee@lshtm.ac.uk",
           role = c("ctb")),
    person("Peter", "Ellis",
           email = "peter.ellis2013nz@gmail.com",
           role = c("ctb")),
    person(given = "EpiForecasts",
             role = c("aut")),
    person("Sebastian", "Funk",
            email = "sebastian.funk@lshtm.ac.uk",
            role = c("aut")))
Description: Estimates the time-varying reproduction number, rate of spread,
             and doubling time using a range of open-source tools (Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>),
             and current best practices (Gostic et al. (2020) <doi:10.1101/2020.06.18.20134858>).
             It aims to help users avoid some of the limitations of naive implementations in a framework
             that is informed by community feedback and is under active development.
License: MIT + file LICENSE
URL: https:/epiforecasts.io/EpiNow2/,
        https:/epiforecasts.io/EpiNow2/dev/,
        https://github.com/epiforecasts/EpiNow2
BugReports: https://github.com/epiforecasts/EpiNow2/issues
Imports: cowplot, data.table, futile.logger (>= 1.4), future,
        future.apply, ggplot2, lubridate, methods, patchwork,
        progressr, purrr, R.utils (>= 2.0.0), Rcpp (>= 0.12.0), rlang
        (>= 0.4.7), rstan (>= 2.21.1), runner, scales, stats,
        truncnorm, lifecycle, utils
Suggests: countrycode, dplyr, EpiSoon, forecastHybrid, here,
        kableExtra, knitr, magrittr, rmarkdown, rnaturalearth,
        rstantools, spelling, tidyr, testthat, covr
Additional_repositories: https://epiforecasts.io/drat/
RoxygenNote: 7.1.1
Biarch: true
Depends: R (>= 3.4.0)
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        rstan (>= 2.21.1), StanHeaders (>= 2.21.0-5)
Language: en-GB
Encoding: UTF-8
LazyData: true
NeedsCompilation: yes
Packaged: 2020-12-13 21:25:20 UTC; epinow2
Author: Sam Abbott [aut, cre] (<https://orcid.org/0000-0001-8057-8037>),
  Joel Hellewell [aut] (<https://orcid.org/0000-0003-2683-0849>),
  Katharine Sherratt [aut],
  Katelyn Gostic [aut],
  Joe Hickson [aut],
  Hamada S. Badr [aut] (<https://orcid.org/0000-0002-9808-2344>),
  Michael DeWitt [aut] (<https://orcid.org/0000-0001-8940-1967>),
  Robin Thompson [aut],
  Sophie Meakin [ctb],
  James Munday [ctb],
  Nikos Bosse [ctb],
  Paul Mee [ctb],
  Peter Ellis [ctb],
  EpiForecasts [aut],
  Sebastian Funk [aut]
Maintainer: Sam Abbott <sam.abbott@lshtm.ac.uk>
Repository: CRAN
Date/Publication: 2020-12-14 09:00:15 UTC
Built: R 4.0.5; x86_64-w64-mingw32; 2022-03-29 09:30:27 UTC; windows
Archs: i386, x64
