averageMatrixEdges	averageMatrixEdges
calcCNVKernelProbDist	calcCNVKernelProbDist
calcVecLMs	calcVecLMs
CNVScopeserver	CNVScopeserver
createChromosomalMatrixSet	createChromosomalMatrixSet
downsample_genomic_matrix	downsample_genomic_matrix
extractNegLogPval	extractNegLogPval
formSampleMatrixFromRawGDCData	formSampleMatrixFromRawGDCData
freadGDCfile	freadGDCfile
getAnnotationMatrix	getAnnotationMatrix
getAsymmetricBlockIndices	getAsymmetricBlockIndices
getBlockAverageMatrixFromBreakpoints	getBlockAverageMatrixFromBreakpoints
getGlobalRescalingStats	getGlobalRescalingStats
getInterchromosomalInteractivePlot	getInterchromosomalInteractivePlot
GRanges_to_underscored_pos	GRanges_to_underscored_pos
importBreakpointBed	importBreakpointBed
mathead	mathead
nbl_result_matrix_sign_small	nbl_result_matrix_sign_small
postProcessLinRegMatrix	postProcessLinRegMatrix
rebinGenomicInteractions	rebinGenomicInteractions
runCNVScopeLocal	runCNVScopeLocal
runCNVScopeShiny	runCNVScopeShiny
signedRescale	signedRescale
underscored_pos_to_GRanges	underscored_pos_to_GRanges
writeAsymmetricMeltedChromosomalMatrixToDisk	writeAsymmetricMeltedChromosomalMatrixToDisk
writeMeltedChromosomalMatrixToDisk	writeMeltedChromosomalMatrixToDisk
