# Creates, Merges, and Reads Binary Dosage Files

## Documentation for package ‘BinaryDosage’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

bdapply | Apply a function to each SNP in a binary dosage file
bdmerge | Merge binary dosage files together
genapply | Apply a function to each SNP in a gen, impute2, file
gentobd | Convert a gen file to a binary dosage file
getaaf | Calculate alternate allele frequency
getbdinfo | Get information about a binary dosage file
getgeninfo | Get information about a gen, impute2, file
getmaf | Calculate minor allele frequency
getrsq | Calculate imputation r squared
getsnp | Read SNP data from a binary dosage file
getvcfinfo | Get information about a vcf file
vcfapply | Apply a function to each SNP in a vcf file
vcftobd | Convert a VCF file to a binary dosage file